Factsheet for TraesCSU01G137900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7B01G044100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62690.1	TraesCS7B01G044100.1	AT3G50960.1	18390592
AT5G62700.1	TraesCS7B01G044100.1	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G534300.1	Wheat	cytosol	99.78	100.0
TraesCS4B01G366500.1	Wheat	cytosol	99.33	99.11
EER95686	Sorghum	cytosol	97.99	98.43
Zm00001d027295_P002	Maize	plasma membrane	97.99	98.43
Os03t0105600-01	Rice	plasma membrane	97.99	98.21
CDY67078	Canola	cytosol	85.94	97.72
VIT_02s0025g03680.t01	Wine grape	cytosol	97.1	97.32
GSMUA_Achr4P11980_001	Banana	plasma membrane	96.43	96.86
AT5G23860.1	Thale cress	cytosol	96.65	96.44
PGSC0003DMT400078206	Potato	cytosol	95.98	96.41
PGSC0003DMT400053750	Potato	cytosol	95.76	96.4
VIT_16s0050g00380.t01	Wine grape	cytosol	96.43	96.21
Bra009710.1-P	Field mustard	cytosol	96.43	96.21
CDX88051	Canola	cytosol	91.29	96.01
CDY00319	Canola	cytosol	96.43	96.0
Bra010114.1-P	Field mustard	cytosol	96.43	96.0
CDY38073	Canola	cytosol	96.43	96.0
CDX86102	Canola	plasma membrane	96.43	96.0
CDX84345	Canola	cytosol	96.43	96.0
Bra019493.1-P	Field mustard	cytosol	96.43	96.0
CDX80390	Canola	cytosol	96.21	95.99
Bra018184.1-P	Field mustard	cytosol	96.21	95.99
KRG91525	Soybean	nucleus	95.98	95.98
KRH35301	Soybean	nucleus	95.98	95.98
VIT_08s0007g01630.t01	Wine grape	cytosol	95.76	95.97
CDY21784	Canola	cytosol	91.29	95.78
CDX99087	Canola	cytosol	91.29	95.78
AT5G62700.1	Thale cress	cytosol	96.21	95.78
AT5G62690.1	Thale cress	cytosol	96.21	95.78
Bra033796.1-P	Field mustard	cytosol	95.98	95.77
VIT_06s0004g05870.t01	Wine grape	cytosol	95.31	95.74
KRH75786	Soybean	nucleus	95.54	95.32
KRH65977	Soybean	nucleus	95.54	95.32
Solyc06g076640.2.1	Tomato	nucleus	95.98	95.13
Solyc06g005910.2.1	Tomato	cytosol, nucleus, unclear	95.09	89.12

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	EnsemblPlantsGene:TraesCSU01G137900	EnsemblPlants:TraesCSU01G137900.1
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	TIGR:cd02187	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:+:126673966..126675545

Molecular Weight (calculated)

50216.4 Da

IEP (calculated)

4.447

GRAVY (calculated)

-0.343

Length

448 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYAGDT DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGGIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEL EDDADLQD

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.