CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73765
CDX77968
CDY26529
CDY57635

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62700.1	CDX73765	AT3G50960.1	18390592
AT5G62700.1	CDX77968	AT3G50960.1	18390592
AT5G62700.1	CDY26529	AT3G50960.1	18390592
AT5G62700.1	CDY57635	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010114.1-P	Field mustard	cytosol	100.0	100.0
CDX99087	Canola	cytosol	94.89	100.0
CDY00319	Canola	cytosol	100.0	100.0
CDY21784	Canola	cytosol	94.89	100.0
CDY38073	Canola	cytosol	100.0	100.0
CDX84345	Canola	cytosol	100.0	100.0
AT5G62700.1	Thale cress	cytosol	99.78	99.78
CDY67078	Canola	cytosol	87.33	99.75
EER95686	Sorghum	cytosol	96.67	97.53
Os03t0105600-01	Rice	plasma membrane	96.0	96.64
TraesCS5A01G534300.1	Wheat	cytosol	96.0	96.64
TraesCSU01G137900.1	Wheat	cytosol	96.0	96.43
PGSC0003DMT400028800	Potato	cytosol	95.78	96.42
CDY53366	Canola	cytosol	96.0	96.21
CDY51360	Canola	cytosol	96.0	96.21
CDY45452	Canola	cytosol	96.0	96.21
CDX97877	Canola	cytosol	96.0	96.21
VIT_08s0007g01630.t01	Wine grape	cytosol	95.56	96.2
TraesCS4B01G366500.1	Wheat	cytosol	95.78	95.99
Zm00001d040509_P001	Maize	cytosol	47.33	95.95
CDX68422	Canola	cytosol	61.11	95.82
PGSC0003DMT400049212	Potato	cytosol	95.33	95.76
Solyc10g086760.1.1	Tomato	nucleus	95.33	95.76
CDX80390	Canola	cytosol	95.33	95.55
CDX88051	Canola	cytosol	90.44	95.54
Solyc10g085020.1.1	Tomato	nucleus	96.0	95.15
CDY31638	Canola	cytosol	92.67	93.92
CDX73198	Canola	cytosol	93.11	93.74
CDX87664	Canola	cytosol	93.11	93.74
CDX94014	Canola	cytosol	92.44	93.27
CDX76444	Canola	cytosol	92.44	93.27
CDY31428	Canola	cytosol	92.44	93.27
CDX84283	Canola	cytosol	92.44	93.27
CDX98679	Canola	cytosol	92.22	93.05
CDX79013	Canola	cytosol	92.0	92.83
CDX82788	Canola	cytosol	92.0	92.83
CDY60599	Canola	cytosol	91.56	92.58
CDX69693	Canola	cytosol	94.67	92.41
CDY69221	Canola	cytosol	91.33	92.36
CDX96965	Canola	cytosol	91.33	92.36
CDY14924	Canola	cytosol	91.33	92.15
CDY49002	Canola	cytosol	91.11	92.13
CDY13108	Canola	cytosol	91.11	92.13
Zm00001d008216_P002	Maize	cytosol	48.44	91.21
CDX97180	Canola	cytosol	94.67	88.57
CDY25017	Canola	cytosol	39.78	43.66
CDY45043	Canola	cytosol	42.89	42.89
CDY03583	Canola	cytosol	42.89	42.89
CDY66630	Canola	cytosol	41.33	42.76
CDY28123	Canola	cytosol	42.67	42.67
CDY50974	Canola	cytosol	42.67	42.67
CDY42294	Canola	cytosol	42.44	42.44
CDY42295	Canola	cytosol	42.44	42.44
CDY44941	Canola	cytosol	42.22	42.22
CDY44942	Canola	cytosol	42.22	42.22
CDX88875	Canola	cytosol	42.0	42.0
CDX92501	Canola	cytosol	42.0	42.0
CDX70890	Canola	cytosol	42.0	42.0
CDX92502	Canola	cytosol	42.0	42.0
CDY29334	Canola	cytosol	40.0	41.76
CDY35856	Canola	cytosol	11.78	35.57
CDY11370	Canola	cytosol	35.33	33.62
CDX71723	Canola	cytosol	35.33	33.62
CDY46272	Canola	cytosol	19.33	30.1
CDY05559	Canola	mitochondrion	29.78	26.64

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078DAQ0	UniProt:A0A078DAQ0
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	EnsemblPlants:CDX86102	ProteinID:CDX86102	ProteinID:CDX86102.1	ProteinID:CDY38073.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00144138001	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF259	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000151E3D4	SEG:seg	:

Description

BnaC03g56170DTubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A078DAQ0]

Coordinates

chrLK031844:-:1477328..1479551

Molecular Weight (calculated)

50750.8 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.421

Length

450 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEDEE EGEYQQEEEY

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.