Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31638 | Canola | cytosol | 99.33 | 99.77 |
| KRH11812 | Soybean | nucleus | 96.86 | 96.86 |
| GSMUA_Achr11P... | Banana | cytosol | 76.01 | 96.86 |
| KRH36829 | Soybean | nucleus | 96.64 | 96.64 |
| Zm00001d036626_P001 | Maize | cytosol | 49.1 | 96.48 |
| Os06t0671900-01 | Rice | plasma membrane | 96.41 | 96.41 |
| VIT_10s0003g05320.t01 | Wine grape | cytosol | 96.19 | 96.4 |
| KRH42279 | Soybean | cytosol | 95.74 | 96.39 |
| KRH58404 | Soybean | nucleus | 95.52 | 96.38 |
| HORVU6Hr1G027620.1 | Barley | plasma membrane | 96.19 | 96.19 |
| EER93354 | Sorghum | cytosol | 95.96 | 96.18 |
| Os03t0780600-01 | Rice | plastid | 95.74 | 96.17 |
| GSMUA_Achr8P07060_001 | Banana | cytosol | 83.86 | 96.14 |
| EES04582 | Sorghum | cytosol | 95.96 | 95.96 |
| TraesCS6D01G130500.2 | Wheat | golgi | 95.74 | 95.96 |
| TraesCS6B01G169300.1 | Wheat | cytosol | 95.52 | 95.95 |
| GSMUA_Achr2P01410_001 | Banana | cytosol | 83.86 | 95.9 |
| GSMUA_Achr5P26680_001 | Banana | cytosol | 83.18 | 95.62 |
| Zm00001d015348_P002 | Maize | plastid | 95.07 | 95.5 |
| GSMUA_Achr3P23490_001 | Banana | cytosol | 79.82 | 95.44 |
| Os02t0167300-01 | Rice | plasma membrane | 95.52 | 95.3 |
| EER90205 | Sorghum | cytosol | 95.29 | 95.29 |
| Zm00001d046996_P001 | Maize | cytosol | 49.33 | 95.24 |
| CDY67078 | Canola | cytosol | 84.08 | 95.18 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 95.07 | 95.07 |
| TraesCS7D01G454200.1 | Wheat | cytosol | 95.07 | 95.07 |
| TraesCS7A01G466600.1 | Wheat | golgi | 95.07 | 95.07 |
| TraesCS5D01G424100.1 | Wheat | cytosol | 94.84 | 95.06 |
| TraesCS5B01G418700.1 | Wheat | golgi | 94.84 | 95.06 |
| GSMUA_Achr5P00290_001 | Banana | cytosol | 83.63 | 94.91 |
| TraesCS5A01G416400.1 | Wheat | cytosol | 94.39 | 94.82 |
| CDX94014 | Canola | cytosol | 94.62 | 94.62 |
| Zm00001d013139_P001 | Maize | cytosol | 62.11 | 94.54 |
| CDX82788 | Canola | cytosol | 94.17 | 94.17 |
| CDY31428 | Canola | cytosol | 94.17 | 94.17 |
| CDX98679 | Canola | cytosol | 94.17 | 94.17 |
| CDX76444 | Canola | cytosol | 94.17 | 94.17 |
| CDX79013 | Canola | cytosol | 94.17 | 94.17 |
| CDX87664 | Canola | cytosol | 93.72 | 93.51 |
| CDX73198 | Canola | cytosol | 93.72 | 93.51 |
| Zm00001d034022_P001 | Maize | cytosol | 54.93 | 93.51 |
| CDX96965 | Canola | cytosol | 93.05 | 93.26 |
| CDX80390 | Canola | cytosol | 93.72 | 93.1 |
| CDY14924 | Canola | cytosol | 93.05 | 93.05 |
| CDY13108 | Canola | cytosol | 92.83 | 93.03 |
| CDY60599 | Canola | cytosol | 92.83 | 93.03 |
| CDX88051 | Canola | cytosol | 88.56 | 92.72 |
| CDY69221 | Canola | cytosol | 92.38 | 92.58 |
| CDY38073 | Canola | cytosol | 93.27 | 92.44 |
| CDY00319 | Canola | cytosol | 93.27 | 92.44 |
| CDX86102 | Canola | plasma membrane | 93.27 | 92.44 |
| CDX84345 | Canola | cytosol | 93.27 | 92.44 |
| CDY49002 | Canola | cytosol | 92.15 | 92.36 |
| CDY51360 | Canola | cytosol | 92.83 | 92.2 |
| CDY53366 | Canola | cytosol | 92.83 | 92.2 |
| CDY45452 | Canola | cytosol | 92.83 | 92.2 |
| CDX97877 | Canola | cytosol | 92.83 | 92.2 |
| CDY21784 | Canola | cytosol | 88.12 | 92.04 |
| CDX99087 | Canola | cytosol | 88.12 | 92.04 |
| GSMUA_Achr6P04600_001 | Banana | cytosol | 86.77 | 91.49 |
| Bra005395.1-P | Field mustard | cytosol | 82.51 | 91.32 |
| CDX69693 | Canola | cytosol | 93.72 | 90.67 |
| CDX68422 | Canola | cytosol | 57.85 | 89.9 |
| CDX97180 | Canola | cytosol | 93.72 | 86.9 |
| GSMUA_Achr6P19990_001 | Banana | cytosol | 78.25 | 84.3 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 94.84 | 83.6 |
| CDY25017 | Canola | cytosol | 39.69 | 43.17 |
| CDY66630 | Canola | cytosol | 41.93 | 42.99 |
| CDY45043 | Canola | cytosol | 42.6 | 42.22 |
| CDY42295 | Canola | cytosol | 42.6 | 42.22 |
| CDY42294 | Canola | cytosol | 42.6 | 42.22 |
| CDY03583 | Canola | cytosol | 42.6 | 42.22 |
| CDY50974 | Canola | cytosol | 42.38 | 42.0 |
| CDY44942 | Canola | cytosol | 42.38 | 42.0 |
| CDY44941 | Canola | cytosol | 42.38 | 42.0 |
| CDY28123 | Canola | cytosol | 42.38 | 42.0 |
| CDX70890 | Canola | cytosol | 42.15 | 41.78 |
| CDX88875 | Canola | cytosol | 42.15 | 41.78 |
| CDX92502 | Canola | cytosol | 41.93 | 41.56 |
| CDX92501 | Canola | cytosol | 41.93 | 41.56 |
| CDY29334 | Canola | cytosol | 39.69 | 41.07 |
| CDY35856 | Canola | cytosol | 11.44 | 34.23 |
| CDY11370 | Canola | cytosol | 35.65 | 33.62 |
| CDX71723 | Canola | cytosol | 35.65 | 33.62 |
| CDY46272 | Canola | cytosol | 18.83 | 29.07 |
| CDY05559 | Canola | mitochondrion | 29.6 | 26.24 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | GO:A0A078DAC6 | InterPro:Beta-tubulin_BS |
| InterPro:Beta_tubulin | EnsemblPlants:CDX84283 | ProteinID:CDX84283 | ProteinID:CDX84283.1 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00141369001 |
| InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 |
| PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF245 | SMART:SM00864 |
| SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom |
| InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0004EDCE1C |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g10450D
Coordinates
chrLK031836:+:1416288..1418553
Molecular Weight (calculated)
50141.2 Da
IEP (calculated)
4.411
GRAVY (calculated)
-0.370
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICNEHGI DPSGKYDGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSIRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LSMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV DEEEYEEEEE DEELEA
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIPPKG LSMASTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV DEEEYEEEEE DEELEA
001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE
Arabidopsis Description
TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.