Factsheet for GSMUA_Achr6P19990_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P20090_001
GSMUA_Achr2P14840_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G20890.1	GSMUA_Achr1P20090_001	AT2G30410.1	20638386
AT5G44340.1	GSMUA_Achr2P14840_001	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036626_P001	Maize	cytosol	51.93	94.71
Zm00001d046996_P001	Maize	cytosol	52.42	93.94
Zm00001d013139_P001	Maize	cytosol	66.18	93.52
Zm00001d034022_P001	Maize	cytosol	58.7	92.75
GSMUA_Achr4P05450_001	Banana	cytosol	58.45	86.12
GSMUA_Achr1P17290_001	Banana	cytosol	74.4	83.47
GSMUA_Achr8P33350_001	Banana	cytosol	58.94	80.79
GSMUA_Achr5P12310_001	Banana	cytosol	66.67	80.7
KRH58404	Soybean	nucleus	85.51	80.09
KRH11812	Soybean	nucleus	85.75	79.6
KRH36829	Soybean	nucleus	85.75	79.6
Os03t0780600-01	Rice	plastid	85.27	79.5
KRH42279	Soybean	cytosol	85.02	79.46
EES04582	Sorghum	cytosol	85.51	79.37
VIT_10s0003g05320.t01	Wine grape	cytosol	85.27	79.33
Os02t0167300-01	Rice	plasma membrane	85.51	79.19
EER90205	Sorghum	cytosol	85.27	79.15
EER93354	Sorghum	cytosol	85.02	79.1
Os06t0671900-01	Rice	plasma membrane	85.02	78.92
TraesCS5B01G418700.1	Wheat	golgi	84.78	78.88
TraesCS5D01G424100.1	Wheat	cytosol	84.78	78.88
TraesCS5A01G416400.1	Wheat	cytosol	84.54	78.83
CDY31638	Canola	cytosol	84.54	78.83
TraesCS6B01G169300.1	Wheat	cytosol	84.06	78.38
Zm00001d015348_P002	Maize	plastid	84.06	78.38
CDX84283	Canola	cytosol	84.3	78.25
HORVU6Hr1G027620.1	Barley	plasma membrane	84.3	78.25
TraesCS6D01G130500.2	Wheat	golgi	84.06	78.2
AT5G44340.1	Thale cress	cytosol	83.33	77.7
HORVU7Hr1G107100.2	Barley	cytosol, nucleus	83.33	77.35
Bra020912.1-P	Field mustard	cytosol	83.33	77.35
CDX98679	Canola	cytosol	83.33	77.35
CDX94014	Canola	cytosol	83.33	77.35
TraesCS7D01G454200.1	Wheat	cytosol	83.33	77.35
GSMUA_Achr4P11980_001	Banana	plasma membrane	83.33	77.35
TraesCS7A01G466600.1	Wheat	golgi	83.33	77.35
AT4G20890.1	Thale cress	cytosol	82.85	77.25
CDX76444	Canola	cytosol	83.09	77.13
CDY31428	Canola	cytosol	83.09	77.13
CDX96965	Canola	cytosol	82.85	77.08
CDY60599	Canola	cytosol	82.85	77.08
Bra027544.1-P	Field mustard	cytosol	82.85	77.08
GSMUA_Achr5P26680_001	Banana	cytosol	72.22	77.06
Bra039506.1-P	Field mustard	cytosol	82.85	76.91
CDY14924	Canola	cytosol	82.85	76.91
Bra038795.1-P	Field mustard	cytosol	82.61	76.85
CDY13108	Canola	cytosol	82.61	76.85
CDX79013	Canola	cytosol	82.61	76.68
CDX82788	Canola	cytosol	82.61	76.68
Bra033737.1-P	Field mustard	cytosol	82.37	76.63
CDY69221	Canola	cytosol	82.37	76.63
GSMUA_Achr2P01410_001	Banana	cytosol	71.98	76.41
CDY49002	Canola	cytosol	82.13	76.4
GSMUA_Achr5P10720_001	Banana	cytosol	69.32	76.33
Bra013481.1-P	Field mustard	cytosol	82.13	76.23
GSMUA_Achr5P00290_001	Banana	cytosol	72.22	76.08
GSMUA_Achr11P...	Banana	cytosol	64.01	75.71
GSMUA_Achr8P07060_001	Banana	cytosol	71.01	75.58
GSMUA_Achr10P...	Banana	cytosol	77.78	75.41
GSMUA_Achr6P08450_001	Banana	cytosol	70.29	75.19
GSMUA_Achr3P23490_001	Banana	cytosol	67.63	75.07
GSMUA_Achr3P18460_001	Banana	cytosol	69.81	74.87
GSMUA_Achr6P16040_001	Banana	cytosol	70.05	74.17
GSMUA_Achr4P26250_001	Banana	cytosol	78.99	73.32
GSMUA_Achr6P04600_001	Banana	cytosol	74.88	73.29
GSMUA_AchrUn_...	Banana	cytosol	63.04	71.7
Bra005395.1-P	Field mustard	cytosol	69.57	71.46
HORVU5Hr1G100900.2	Barley	cytosol	84.78	69.37
GSMUA_Achr5P21740_001	Banana	cytosol	77.05	63.42
GSMUA_Achr8P15410_001	Banana	cytosol	26.33	45.8
GSMUA_Achr6P29670_001	Banana	cytosol	23.91	44.59
GSMUA_Achr6P00620_001	Banana	cytosol	31.64	39.82
GSMUA_Achr7P08080_001	Banana	cytosol	30.19	39.81
GSMUA_Achr2P17250_001	Banana	cytosol	31.4	39.51
GSMUA_Achr7P01800_001	Banana	cytosol	35.99	36.79
GSMUA_Achr7P17960_001	Banana	cytosol	35.27	36.78
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	39.37	36.22
GSMUA_Achr5P14830_001	Banana	cytosol	35.99	34.73
GSMUA_Achr1P14750_001	Banana	cytosol	35.02	30.33
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G19990_001	EnsemblPlants:GSMUA_Achr6P19990_001	EnsemblPlants:GSMUA_Achr6T19990_001
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0T8J7	PFAM:PF00091	PRINTS:PR01161
PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245	SMART:SM00864
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002966041	SEG:seg	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr6G19990_001]

Coordinates

chr6:-:14351304..14360882

Molecular Weight (calculated)

46591.6 Da

IEP (calculated)

5.435

GRAVY (calculated)

-0.181

Length

414 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DGSGRYNGDS ELQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTGLKMA STFIGNSTSI
301: QEMFRRVSEQ FTAMFRRKAF LHWYTGEGMD EMEFTEAESN MNDLVAEYQQ YQDATADFLK SYASLVYYYL SSKIRKIVLK STSSWEIIRF FIPTKCLKHV
401: NNSLFLEDNL FPHV

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.