Factsheet for GSMUA_Achr8P33350_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P05450_001	Banana	cytosol	74.17	79.72
GSMUA_Achr3P23490_001	Banana	cytosol	85.76	69.44
GSMUA_Achr5P26680_001	Banana	cytosol	87.09	67.78
GSMUA_Achr2P01410_001	Banana	cytosol	87.09	67.44
GSMUA_Achr8P07060_001	Banana	cytosol	86.09	66.84
GSMUA_Achr5P00290_001	Banana	cytosol	86.75	66.67
GSMUA_Achr5P12310_001	Banana	cytosol	75.17	66.37
GSMUA_Achr6P16040_001	Banana	cytosol	85.1	65.73
GSMUA_Achr1P17290_001	Banana	cytosol	78.48	64.23
GSMUA_AchrUn_...	Banana	cytosol	76.49	63.46
GSMUA_Achr5P10720_001	Banana	cytosol	75.5	60.64
GSMUA_Achr11P...	Banana	cytosol	69.87	60.29
GSMUA_Achr10P...	Banana	cytosol	84.77	59.95
GSMUA_Achr6P04600_001	Banana	cytosol	83.77	59.81
GSMUA_Achr3P18460_001	Banana	cytosol	75.5	59.07
GSMUA_Achr6P19990_001	Banana	cytosol	80.79	58.94
GSMUA_Achr6P08450_001	Banana	cytosol	75.17	58.66
GSMUA_Achr4P11980_001	Banana	plasma membrane	86.42	58.52
GSMUA_Achr11P...	Banana	cytosol	2.32	58.33
GSMUA_Achr4P26250_001	Banana	cytosol	84.11	56.95
GSMUA_Achr5P21740_001	Banana	cytosol	84.44	50.7
GSMUA_Achr8P15410_001	Banana	cytosol	30.46	38.66
GSMUA_Achr6P29670_001	Banana	cytosol	27.15	36.94
GSMUA_Achr6P00620_001	Banana	cytosol	38.08	34.95
GSMUA_Achr2P17250_001	Banana	cytosol	38.08	34.95
GSMUA_Achr7P08080_001	Banana	cytosol	35.76	34.39
GSMUA_Achr7P17960_001	Banana	cytosol	40.4	30.73
GSMUA_Achr7P01800_001	Banana	cytosol	40.07	29.88
GSMUA_Achr5P14830_001	Banana	cytosol	42.05	29.6
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	42.72	28.67
GSMUA_Achr1P14750_001	Banana	cytosol	40.73	25.73

Protein Annotations

Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Beta-tubulin_BS	InterPro:Epsilon_tubulin	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G33350_001	EnsemblPlants:GSMUA_Achr8P33350_001	EnsemblPlants:GSMUA_Achr8T33350_001
InterPro:IPR036525	InterPro:IPR037103	UniProt:M0TVT7	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01519
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF245	SMART:SM00864	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000294BCF7	SEG:seg	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr8G33350_001]

Coordinates

chr8:-:34431696..34434339

Molecular Weight (calculated)

33169.7 Da

IEP (calculated)

5.338

GRAVY (calculated)

-0.140

Length

302 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVICEEHGI DSTGNCTGDS GLQLERINVY YNEANGGRYS GAGNNWAKGH YTEGAELIDA VLDVVRKEAE NCDCLQGFQV
101: CHSLGGGTGS GMGTLLISKI REEYPDRMML TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL KLATPTFGDL NHLISATMSG
201: VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMVGFAPLTS RGSQQYCALT VPELTQQMWD AKNMIGFPTT SNPAYATVLP RGLRWLPLSL ATQPPSRRCS
301: GE

Best Arabidopsis Sequence Match ( AT1G20010.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET

Arabidopsis Description

TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.