Factsheet for GSMUA_Achr5P10720_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12310_001	Banana	cytosol	84.57	92.98
GSMUA_Achr1P17290_001	Banana	cytosol	86.7	88.35
GSMUA_AchrUn_...	Banana	cytosol	84.04	86.81
GSMUA_Achr6P16040_001	Banana	cytosol	81.38	78.26
GSMUA_Achr8P07060_001	Banana	cytosol	80.85	78.15
GSMUA_Achr5P26680_001	Banana	cytosol	80.32	77.84
GSMUA_Achr2P01410_001	Banana	cytosol	80.59	77.69
GSMUA_Achr3P23490_001	Banana	cytosol	76.6	77.21
GSMUA_Achr5P00290_001	Banana	cytosol	80.32	76.84
GSMUA_Achr4P26250_001	Banana	cytosol	90.96	76.68
VIT_02s0025g03540.t01	Wine grape	cytosol	90.16	76.35
GSMUA_Achr8P33350_001	Banana	cytosol	60.64	75.5
KRH41169	Soybean	cytosol	88.3	74.61
KRH59870	Soybean	endoplasmic reticulum	87.23	73.54
GSMUA_Achr11P...	Banana	cytosol	68.09	73.14
GSMUA_Achr4P11980_001	Banana	plasma membrane	86.44	72.87
GSMUA_Achr10P...	Banana	cytosol	81.12	71.43
GSMUA_Achr3P18460_001	Banana	cytosol	73.14	71.24
GSMUA_Achr6P08450_001	Banana	cytosol	72.87	70.8
GSMUA_Achr6P04600_001	Banana	cytosol	78.99	70.21
GSMUA_Achr4P05450_001	Banana	cytosol	52.39	70.11
GSMUA_Achr6P19990_001	Banana	cytosol	76.33	69.32
GSMUA_Achr5P21740_001	Banana	cytosol	80.85	60.44
GSMUA_Achr8P15410_001	Banana	cytosol	23.4	36.97
GSMUA_Achr6P29670_001	Banana	cytosol	21.01	35.59
GSMUA_Achr6P00620_001	Banana	cytosol	28.99	33.13
GSMUA_Achr2P17250_001	Banana	cytosol	28.99	33.13
GSMUA_Achr7P08080_001	Banana	cytosol	27.66	33.12
GSMUA_Achr7P01800_001	Banana	cytosol	34.84	32.35
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	38.56	32.22
GSMUA_Achr7P17960_001	Banana	cytosol	33.24	31.49
GSMUA_Achr5P14830_001	Banana	cytosol	34.84	30.54
GSMUA_Achr1P14750_001	Banana	cytosol	37.5	29.5
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Beta-tubulin_BS	ncoils:Coil
InterPro:Epsilon_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G10720_001
EnsemblPlants:GSMUA_Achr5P10720_001	EnsemblPlants:GSMUA_Achr5T10720_001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M0SXF1
PFAM:PF00091	PFAM:PF03953	PRINTS:PR01519	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF124	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002954A7A	SEG:seg	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr5G10720_001]

Coordinates

chr5:-:7665169..7670927

Molecular Weight (calculated)

42252.7 Da

IEP (calculated)

4.336

GRAVY (calculated)

-0.330

Length

376 amino acids

Sequence
(BLAST)

001: MREILHIQAG QCGNQIGAKF WEVVSDEHGI DAKGDYVGDS RLQLERVDVY YNEASGGRYN GAGNNWAKGH YTEGAELIDA VLDVVRKEAE NCDLLQGFQI
101: CHSLGGGTGS GMGTLLISKI REEYPDRMMM TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL KLTNPSFGDL NHLISTTMSG
201: VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF FMVGFTPLTS RGTKEVDEQM ISVQNKNSSY FVEWIPNNVK SSVCDIPPTG LAMSATFMGN STSIQEMFRR
301: VSEQFTVMFR RKAFLHWYTG EGMDEMEFTE AESNMNDLVS EYQQYQDAVV DEDDDEYGDQ EADLSSCIQC WDHSCK

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.