Factsheet for GSMUA_Achr5P21740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	2.39	100.0
GSMUA_Achr6P08450_001	Banana	cytosol	73.16	95.09
GSMUA_Achr6P16040_001	Banana	cytosol	73.76	94.88
GSMUA_Achr10P...	Banana	cytosol	80.52	94.85
GSMUA_Achr3P18460_001	Banana	cytosol	72.76	94.82
GSMUA_Achr11P...	Banana	cytosol	65.41	94.0
GSMUA_Achr3P23490_001	Banana	cytosol	69.38	93.57
GSMUA_Achr2P01410_001	Banana	cytosol	72.17	93.08
GSMUA_Achr8P07060_001	Banana	cytosol	71.77	92.8
GSMUA_Achr5P00290_001	Banana	cytosol	72.17	92.37
GSMUA_Achr5P26680_001	Banana	cytosol	71.17	92.27
GSMUA_Achr4P05450_001	Banana	cytosol	51.49	92.17
VIT_06s0009g02020.t01	Wine grape	cytosol	81.71	92.15
GSMUA_Achr4P11980_001	Banana	plasma membrane	79.32	89.46
GSMUA_Achr6P04600_001	Banana	cytosol	74.75	88.89
GSMUA_Achr1P17290_001	Banana	cytosol	65.01	88.62
GSMUA_AchrUn_...	Banana	cytosol	63.82	88.19
GSMUA_Achr4P26250_001	Banana	cytosol	75.94	85.65
GSMUA_Achr8P33350_001	Banana	cytosol	50.7	84.44
GSMUA_Achr5P12310_001	Banana	cytosol	56.86	83.63
GSMUA_Achr5P10720_001	Banana	cytosol	60.44	80.85
GSMUA_Achr6P19990_001	Banana	cytosol	63.42	77.05
GSMUA_Achr8P15410_001	Banana	cytosol	21.87	46.22
GSMUA_Achr6P29670_001	Banana	cytosol	20.08	45.5
GSMUA_Achr7P17960_001	Banana	cytosol	32.21	40.81
GSMUA_Achr6P00620_001	Banana	cytosol	26.64	40.73
GSMUA_Achr7P08080_001	Banana	cytosol	25.25	40.45
GSMUA_Achr2P17250_001	Banana	cytosol	26.44	40.43
GSMUA_Achr5P14830_001	Banana	cytosol	34.19	40.09
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	35.59	39.78
GSMUA_Achr7P01800_001	Banana	cytosol	32.01	39.75
GSMUA_Achr1P14750_001	Banana	cytosol	30.02	31.59

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta_tubulin	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr5G21740_001	EnsemblPlants:GSMUA_Achr5P21740_001	EnsemblPlants:GSMUA_Achr5T21740_001	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M0T0J9	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF106	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00029527FA	SEG:seg	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr5G21740_001]

Coordinates

chr5:+:23880378..23885142

Molecular Weight (calculated)

55859.4 Da

IEP (calculated)

4.630

GRAVY (calculated)

-0.297

Length

503 amino acids

Sequence
(BLAST)

001: MSLTLEGIIV IKTHPSNGIR EPTGESEGKS GGRPIPSPVF ANIKPPPHKS GSPRFETSVS LRSLWEATPI SLFPPVKMRE ILHVQGGQCG NQIGAKFWEV
101: VCDEHGIDAT GRYIGKSDLQ LERVNVYYNE ASCGRFVPRA VLMDLEPGTM DSVRTGPYGQ IFRPDNFVFG QSGAGNNWAK GHYTEGAELI DSVLDVVRKE
201: AENCDCLQGF QVCHSLGGGT GSGMGTLLIS KIREEYPDRM MLTFSVFPSP KVSDTVVEPY NATLSVHQLV ENADECMVLD NEALYDICFR TLKLTTPSFG
301: DLNHLISVTM SGVTCCLRFP GQLNSDLRKL AVNLIPFPRL HFFMVGFAPL TSRGSQQYCA LTVPELTQQM WDAKNMMCAA DPRHGRYLTA SAMFRGKMST
401: KEVDEQMIIV QNKNSSYFVE WIPNNVKSSV CDIPPRGLSM ASTFIGNSTS IQEMFRRGMD EMEFTEAESN MNDLVSEYQQ YQDATADEED DYEGDEEEVL
501: QDV

Best Arabidopsis Sequence Match ( AT5G12250.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVCDEHGI DPTGRYVGNS DLQLERVNVY YNEASCGRYV PRAILMDLEP GTMDSVRTGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK SSVCDIAPRG LSMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DDEGEYEEDE DEEEILDHE

Arabidopsis Description

TUBB6Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UPR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.