Factsheet for GSMUA_Achr4P05450_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P33350_001	Banana	cytosol	79.72	74.17
GSMUA_Achr3P18460_001	Banana	cytosol	90.75	66.06
GSMUA_Achr6P08450_001	Banana	cytosol	90.75	65.89
GSMUA_Achr11P...	Banana	cytosol	79.72	64.0
GSMUA_Achr10P...	Banana	cytosol	92.17	60.66
GSMUA_Achr3P23490_001	Banana	cytosol	79.72	60.05
GSMUA_Achr4P11980_001	Banana	plasma membrane	93.95	59.19
GSMUA_Achr6P19990_001	Banana	cytosol	86.12	58.45
GSMUA_Achr6P04600_001	Banana	cytosol	87.54	58.16
GSMUA_Achr6P16040_001	Banana	cytosol	80.78	58.06
GSMUA_Achr8P07060_001	Banana	cytosol	80.07	57.84
GSMUA_Achr5P26680_001	Banana	cytosol	79.36	57.47
GSMUA_Achr2P01410_001	Banana	cytosol	79.72	57.44
GSMUA_Achr5P12310_001	Banana	cytosol	69.75	57.31
GSMUA_Achr5P00290_001	Banana	cytosol	79.36	56.74
GSMUA_Achr4P26250_001	Banana	cytosol	89.32	56.28
GSMUA_Achr1P17290_001	Banana	cytosol	73.67	56.1
GSMUA_AchrUn_...	Banana	cytosol	70.46	54.4
GSMUA_Achr5P10720_001	Banana	cytosol	70.11	52.39
GSMUA_Achr5P21740_001	Banana	cytosol	92.17	51.49
GSMUA_Achr11P...	Banana	cytosol	2.14	50.0
GSMUA_Achr8P15410_001	Banana	cytosol	34.52	40.76
GSMUA_Achr6P29670_001	Banana	cytosol	31.32	39.64
GSMUA_Achr6P00620_001	Banana	cytosol	42.35	36.17
GSMUA_Achr2P17250_001	Banana	cytosol	42.35	36.17
GSMUA_Achr7P08080_001	Banana	cytosol	39.86	35.67
GSMUA_Achr7P17960_001	Banana	cytosol	44.48	31.49
GSMUA_Achr7P01800_001	Banana	cytosol	43.06	29.88
GSMUA_Achr5P14830_001	Banana	cytosol	44.84	29.37
GSMUA_Achr2P12390_001	Banana	cytosol, plasma membrane	44.84	28.0
GSMUA_Achr1P14750_001	Banana	cytosol	41.28	24.27

Protein Annotations

MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G05450_001	EnsemblPlants:GSMUA_Achr4P05450_001	EnsemblPlants:GSMUA_Achr4T05450_001	InterPro:IPR036525	InterPro:IPR037103
UniProt:M0SLB2	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227
ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SUPFAM:SSF52490	SUPFAM:SSF55307
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002961E33	SEG:seg	:	:	:

Description

Tubulin beta-1 chain [Source:GMGC_GENE;Acc:GSMUA_Achr4G05450_001]

Coordinates

chr4:+:4203494..4205972

Molecular Weight (calculated)

30842.1 Da

IEP (calculated)

5.938

GRAVY (calculated)

-0.093

Length

281 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGANC GRFVPRAVLM DLEPGTMDSV RSGSYGQIFR PDNFVFGQSG AGNNWAKGHY TEGAELIDAV LDVVRKEAEN CDCLQGFQVC
101: HSLGGGTGSG MGTLLISKIR EEYPDRMMLT FSVFPSPKVS DTVVEPYNAT LSVHQLVENA DECMVLDNEA LYDICFRTLK LTTPSFGDLN HLISATMSGV
201: TCCLRFPGQL NSDLRKLAVN LIPFPRLHFF MVGFAPLTSR GSQQYRALTV PELTQQMWDA KNMIGFRTMS NPQSVTSPPL G

Best Arabidopsis Sequence Match ( AT2G29550.1 )
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY

Arabidopsis Description

TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.