Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79013 | Canola | cytosol | 98.42 | 97.98 |
| CDX82788 | Canola | cytosol | 98.42 | 97.98 |
| Bra020912.1-P | Field mustard | cytosol | 97.97 | 97.53 |
| CDX98679 | Canola | cytosol | 97.75 | 97.31 |
| CDX76444 | Canola | cytosol | 97.75 | 97.31 |
| CDX94014 | Canola | cytosol | 97.75 | 97.31 |
| CDY31428 | Canola | cytosol | 97.75 | 97.31 |
| Bra013481.1-P | Field mustard | cytosol | 97.3 | 96.86 |
| Bra038795.1-P | Field mustard | cytosol | 97.07 | 96.85 |
| AT5G44340.1 | Thale cress | cytosol | 96.62 | 96.62 |
| GSMUA_Achr11P... | Banana | cytosol | 75.45 | 95.71 |
| VIT_10s0003g05320.t01 | Wine grape | cytosol | 94.37 | 94.16 |
| KRH58404 | Soybean | nucleus | 93.69 | 94.12 |
| GSMUA_Achr5P26680_001 | Banana | cytosol | 82.21 | 94.07 |
| EES04582 | Sorghum | cytosol | 94.37 | 93.95 |
| KRH11812 | Soybean | nucleus | 94.37 | 93.95 |
| TraesCS6B01G169300.1 | Wheat | cytosol | 93.92 | 93.92 |
| Os03t0780600-01 | Rice | plastid | 93.92 | 93.92 |
| KRH42279 | Soybean | cytosol | 93.69 | 93.91 |
| GSMUA_Achr2P01410_001 | Banana | cytosol | 82.43 | 93.85 |
| Zm00001d036626_P001 | Maize | cytosol | 47.97 | 93.83 |
| Os06t0671900-01 | Rice | plasma membrane | 94.14 | 93.72 |
| KRH36829 | Soybean | nucleus | 94.14 | 93.72 |
| TraesCS6D01G130500.2 | Wheat | golgi | 93.92 | 93.71 |
| GSMUA_Achr8P07060_001 | Banana | cytosol | 81.98 | 93.57 |
| TraesCS7A01G466600.1 | Wheat | golgi | 93.92 | 93.5 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 93.92 | 93.5 |
| TraesCS7D01G454200.1 | Wheat | cytosol | 93.92 | 93.5 |
| EER90205 | Sorghum | cytosol | 93.92 | 93.5 |
| GSMUA_Achr3P23490_001 | Banana | cytosol | 78.38 | 93.3 |
| HORVU6Hr1G027620.1 | Barley | plasma membrane | 93.69 | 93.27 |
| EER93354 | Sorghum | cytosol | 93.47 | 93.26 |
| Os02t0167300-01 | Rice | plasma membrane | 93.69 | 93.06 |
| Zm00001d015348_P002 | Maize | plastid | 93.02 | 93.02 |
| TraesCS5D01G424100.1 | Wheat | cytosol | 93.02 | 92.81 |
| TraesCS5B01G418700.1 | Wheat | golgi | 93.02 | 92.81 |
| TraesCS5A01G416400.1 | Wheat | cytosol | 92.79 | 92.79 |
| Zm00001d046996_P001 | Maize | cytosol | 48.2 | 92.64 |
| GSMUA_Achr5P00290_001 | Banana | cytosol | 81.98 | 92.62 |
| Zm00001d013139_P001 | Maize | cytosol | 60.81 | 92.15 |
| AT2G29550.1 | Thale cress | cytosol | 92.79 | 91.76 |
| Zm00001d034022_P001 | Maize | cytosol | 54.05 | 91.6 |
| AT5G23860.1 | Thale cress | cytosol | 92.34 | 91.31 |
| AT5G62700.1 | Thale cress | cytosol | 92.34 | 91.11 |
| AT5G62690.1 | Thale cress | cytosol | 92.34 | 91.11 |
| AT1G75780.1 | Thale cress | cytosol | 91.67 | 91.05 |
| AT1G20010.1 | Thale cress | cytosol | 91.89 | 90.87 |
| AT5G12250.1 | Thale cress | cytosol | 91.67 | 90.65 |
| GSMUA_Achr6P04600_001 | Banana | cytosol | 85.36 | 89.6 |
| GSMUA_Achr6P19990_001 | Banana | cytosol | 77.25 | 82.85 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 93.02 | 81.62 |
| AT1G04820.1 | Thale cress | cytosol | 43.02 | 42.44 |
| AT1G50010.1 | Thale cress | cytosol | 43.02 | 42.44 |
| AT4G14960.2 | Thale cress | cytosol | 43.02 | 42.44 |
| AT5G19770.1 | Thale cress | cytosol | 42.12 | 41.56 |
| AT5G19780.1 | Thale cress | cytosol | 42.12 | 41.56 |
| AT1G64740.1 | Thale cress | cytosol | 41.67 | 41.11 |
| AT3G61650.1 | Thale cress | cytosol | 35.36 | 33.12 |
| AT5G05620.1 | Thale cress | cytosol | 34.91 | 32.7 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:827837 | UniProt:A0A178UU99 |
| ProteinID:AAA32887.1 | ProteinID:AEE84372.1 | ArrayExpress:AT4G20890 | EnsemblPlantsGene:AT4G20890 | RefSeq:AT4G20890 | TAIR:AT4G20890 |
| RefSeq:AT4G20890-TAIR-G | EnsemblPlants:AT4G20890.1 | TAIR:AT4G20890.1 | EMBL:AY087594 | EMBL:AY128337 | InterPro:Beta-tubulin_BS |
| InterPro:Beta_tubulin | ProteinID:CAB45884.1 | ProteinID:CAB79089.1 | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 |
| GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005856 |
| GO:GO:0005874 | GO:GO:0005886 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009506 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0045298 | GO:GO:0046686 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_193821.1 |
| ProteinID:OAO97458.1 | UniProt:P29517 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025074 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01163 |
| ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF245 | SMART:SM00864 | SMART:SM00865 |
| SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUB9 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom |
| InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI0000001437 |
| SEG:seg | : | : | : | : | : |
Description
TUBB9Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UU99]
Coordinates
chr4:+:11182092..11184559
Molecular Weight (calculated)
49660.7 Da
IEP (calculated)
4.417
GRAVY (calculated)
-0.332
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICGEHGI DQTGQSCGDT DLQLERINVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIAPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATV GEEEYEEDEE EEEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.