Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018379.1-P | Field mustard | cytosol | 98.0 | 98.0 |
| CDY53366 | Canola | cytosol | 97.77 | 97.77 |
| CDY51360 | Canola | cytosol | 97.77 | 97.77 |
| CDY45452 | Canola | cytosol | 97.77 | 97.77 |
| CDX97877 | Canola | cytosol | 97.77 | 97.77 |
| Bra039987.1-P | Field mustard | cytosol | 97.55 | 97.55 |
| AT5G23860.1 | Thale cress | cytosol | 95.55 | 95.55 |
| AT5G62700.1 | Thale cress | cytosol | 95.1 | 94.89 |
| AT5G62690.1 | Thale cress | cytosol | 95.1 | 94.89 |
| AT5G12250.1 | Thale cress | cytosol | 94.43 | 94.43 |
| AT1G75780.1 | Thale cress | cytosol | 93.1 | 93.51 |
| AT4G20890.1 | Thale cress | cytosol | 91.76 | 92.79 |
| AT5G44340.1 | Thale cress | cytosol | 91.31 | 92.34 |
| AT1G20010.1 | Thale cress | cytosol | 91.76 | 91.76 |
| AT5G19780.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT5G19770.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT1G50010.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT1G04820.1 | Thale cress | cytosol | 41.87 | 41.78 |
| AT4G14960.2 | Thale cress | cytosol | 41.65 | 41.56 |
| AT1G64740.1 | Thale cress | cytosol | 41.43 | 41.33 |
| AT3G61650.1 | Thale cress | cytosol | 35.19 | 33.33 |
| AT5G05620.1 | Thale cress | cytosol | 34.74 | 32.91 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:817504 | UniProt:A0A178VS27 |
| ProteinID:AAA32885.1 | ProteinID:AAC95184.1 | ProteinID:AEC08272.1 | EMBL:AF370568 | ArrayExpress:AT2G29550 | EnsemblPlantsGene:AT2G29550 |
| RefSeq:AT2G29550 | TAIR:AT2G29550 | RefSeq:AT2G29550-TAIR-G | EnsemblPlants:AT2G29550.1 | TAIR:AT2G29550.1 | EMBL:AY085710 |
| EMBL:AY090345 | Unigene:At.329 | EMBL:BT001121 | InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0005886 | GO:GO:0006950 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009506 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0030312 | GO:GO:0045298 | GO:GO:0046686 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 |
| RefSeq:NP_180515.1 | ProteinID:OAP09247.1 | UniProt:P29515 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0006339 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01161 |
| PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF264 | SMART:SM00864 |
| SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | Symbol:TUB7 | InterPro:Tub_FtsZ_C | InterPro:Tubulin |
| InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase |
| UniParc:UPI0000000ABE | SEG:seg | : | : | : | : |
Description
TUBB7Tubulin beta-7 chain [Source:UniProtKB/Swiss-Prot;Acc:P29515]
Coordinates
chr2:-:12643917..12646057
Molecular Weight (calculated)
50749.9 Da
IEP (calculated)
4.466
GRAVY (calculated)
-0.413
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVVNLEHGI DQTGRYVGDS ELQLERVNVY YNEASCGRYV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLSTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRNLTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGEYEEEE AEYEQEETY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.