Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96965 | Canola | cytosol | 98.87 | 98.65 |
| Bra027544.1-P | Field mustard | cytosol | 98.87 | 98.65 |
| Bra039506.1-P | Field mustard | cytosol | 98.87 | 98.43 |
| CDY14924 | Canola | cytosol | 98.87 | 98.43 |
| CDY13108 | Canola | cytosol | 98.65 | 98.43 |
| CDY60599 | Canola | cytosol | 98.65 | 98.43 |
| CDY69221 | Canola | cytosol | 98.42 | 98.2 |
| Bra033737.1-P | Field mustard | cytosol | 98.2 | 97.98 |
| CDY49002 | Canola | cytosol | 98.2 | 97.98 |
| AT4G20890.1 | Thale cress | cytosol | 96.62 | 96.62 |
| GSMUA_Achr11P... | Banana | cytosol | 75.45 | 95.71 |
| KRH58404 | Soybean | nucleus | 94.37 | 94.8 |
| KRH11812 | Soybean | nucleus | 95.05 | 94.62 |
| KRH36829 | Soybean | nucleus | 94.82 | 94.39 |
| VIT_10s0003g05320.t01 | Wine grape | cytosol | 94.59 | 94.38 |
| Zm00001d036626_P001 | Maize | cytosol | 48.2 | 94.27 |
| KRH42279 | Soybean | cytosol | 93.92 | 94.13 |
| GSMUA_Achr5P26680_001 | Banana | cytosol | 82.21 | 94.07 |
| Os06t0671900-01 | Rice | plasma membrane | 94.37 | 93.95 |
| EES04582 | Sorghum | cytosol | 94.37 | 93.95 |
| GSMUA_Achr2P01410_001 | Banana | cytosol | 82.43 | 93.85 |
| EER90205 | Sorghum | cytosol | 94.14 | 93.72 |
| Os03t0780600-01 | Rice | plastid | 93.69 | 93.69 |
| GSMUA_Achr8P07060_001 | Banana | cytosol | 81.98 | 93.57 |
| TraesCS6B01G169300.1 | Wheat | cytosol | 93.47 | 93.47 |
| GSMUA_Achr3P23490_001 | Banana | cytosol | 78.38 | 93.3 |
| Os02t0167300-01 | Rice | plasma membrane | 93.92 | 93.29 |
| EER93354 | Sorghum | cytosol | 93.47 | 93.26 |
| TraesCS6D01G130500.2 | Wheat | golgi | 93.47 | 93.26 |
| Zm00001d046996_P001 | Maize | cytosol | 48.42 | 93.07 |
| Zm00001d013139_P001 | Maize | cytosol | 61.26 | 92.83 |
| HORVU6Hr1G027620.1 | Barley | plasma membrane | 93.24 | 92.83 |
| TraesCS5D01G424100.1 | Wheat | cytosol | 93.02 | 92.81 |
| TraesCS5B01G418700.1 | Wheat | golgi | 93.02 | 92.81 |
| TraesCS5A01G416400.1 | Wheat | cytosol | 92.79 | 92.79 |
| Zm00001d015348_P002 | Maize | plastid | 92.79 | 92.79 |
| GSMUA_Achr5P00290_001 | Banana | cytosol | 81.98 | 92.62 |
| TraesCS7D01G454200.1 | Wheat | cytosol | 93.02 | 92.6 |
| TraesCS7A01G466600.1 | Wheat | golgi | 93.02 | 92.6 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 93.02 | 92.6 |
| Zm00001d034022_P001 | Maize | cytosol | 54.5 | 92.37 |
| AT1G20010.1 | Thale cress | cytosol | 92.57 | 91.54 |
| AT2G29550.1 | Thale cress | cytosol | 92.34 | 91.31 |
| AT1G75780.1 | Thale cress | cytosol | 91.67 | 91.05 |
| AT5G62700.1 | Thale cress | cytosol | 91.89 | 90.67 |
| AT5G62690.1 | Thale cress | cytosol | 91.89 | 90.67 |
| AT5G12250.1 | Thale cress | cytosol | 91.44 | 90.42 |
| AT5G23860.1 | Thale cress | cytosol | 91.44 | 90.42 |
| GSMUA_Achr6P04600_001 | Banana | cytosol | 85.81 | 90.07 |
| GSMUA_Achr6P19990_001 | Banana | cytosol | 77.7 | 83.33 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 93.02 | 81.62 |
| AT1G50010.1 | Thale cress | cytosol | 43.02 | 42.44 |
| AT1G04820.1 | Thale cress | cytosol | 43.02 | 42.44 |
| AT4G14960.2 | Thale cress | cytosol | 42.79 | 42.22 |
| AT5G19770.1 | Thale cress | cytosol | 42.57 | 42.0 |
| AT5G19780.1 | Thale cress | cytosol | 42.57 | 42.0 |
| AT1G64740.1 | Thale cress | cytosol | 41.89 | 41.33 |
| AT3G61650.1 | Thale cress | cytosol | 36.04 | 33.76 |
| AT5G05620.1 | Thale cress | cytosol | 35.59 | 33.33 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | EntrezGene:834459 | UniProt:A0A178UGW7 |
| ProteinID:AAA32757.1 | ProteinID:AED95098.1 | ArrayExpress:AT5G44340 | EnsemblPlantsGene:AT5G44340 | RefSeq:AT5G44340 | TAIR:AT5G44340 |
| RefSeq:AT5G44340-TAIR-G | EnsemblPlants:AT5G44340.1 | TAIR:AT5G44340.1 | EMBL:AY035141 | EMBL:AY059075 | Unigene:At.47572 |
| ProteinID:BAB10119.1 | InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin | ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 | GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0005886 |
| GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009536 | GO:GO:0009570 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030312 | GO:GO:0045298 |
| GO:GO:0048046 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | RefSeq:NP_199247.1 | ProteinID:OAO92464.1 |
| UniProt:P24636 | PFAM:PF00091 | PFAM:PF03953 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 |
| ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF245 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 |
| SUPFAM:SSF55307 | Symbol:TUB4 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf |
| InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI00001369F6 | SEG:seg |
Description
TUBB4Tubulin beta-4 chain [Source:UniProtKB/Swiss-Prot;Acc:P24636]
Coordinates
chr5:-:17859136..17861150
Molecular Weight (calculated)
49825.9 Da
IEP (calculated)
4.487
GRAVY (calculated)
-0.347
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICDEHGI DHTGQYVGDS PLQLERIDVY FNEASGGKYV PRAVLMDLEP GTMDSLRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMMTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLANP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YSALSVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAVFRGK LSTKEVDEQM MNIQNKNSSY FVEWIPNNVK SSVCDIAPKG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA GEEEYEEEEE EYET
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.