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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 4
  • extracellular 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, extracellular, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:extracellular
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0816500-01
Os05t0255600-01
Os11t0604700-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G20890.1 Os02t0816500-01 AT2G30410.1 20638386
AT5G44340.1 Os05t0255600-01 AT3G50960.1 18390592
AT5G44340.1 Os11t0604700-00 AT3G50960.1 18390592
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER93354 Sorghum cytosol 98.87 98.65
Zm00001d013139_P001 Maize cytosol 64.41 97.61
GSMUA_Achr11P... Banana cytosol 76.58 97.14
TraesCS5D01G424100.1 Wheat cytosol 97.3 97.08
TraesCS5B01G418700.1 Wheat golgi 97.3 97.08
TraesCS5A01G416400.1 Wheat cytosol 97.07 97.07
KRH58404 Soybean nucleus 96.17 96.61
Zm00001d034022_P001 Maize cytosol 56.98 96.56
Os06t0671900-01 Rice plasma membrane 96.85 96.41
KRH11812 Soybean nucleus 96.85 96.41
CDY31638 Canola cytosol 96.4 96.4
KRH42279 Soybean cytosol 96.17 96.39
Os02t0167300-01 Rice plasma membrane 96.85 96.2
KRH36829 Soybean nucleus 96.62 96.19
VIT_10s0003g05320.t01 Wine grape cytosol 96.4 96.18
GSMUA_Achr2P01410_001 Banana cytosol 84.46 96.15
GSMUA_Achr8P07060_001 Banana cytosol 84.01 95.89
GSMUA_Achr5P26680_001 Banana cytosol 83.78 95.88
CDX84283 Canola cytosol 96.17 95.74
GSMUA_Achr3P23490_001 Banana cytosol 80.18 95.44
GSMUA_Achr5P00290_001 Banana cytosol 84.23 95.17
CDX98679 Canola cytosol 94.82 94.39
Os05t0413200-01 Rice plasma membrane 94.37 94.37
Os01t0805900-01 Rice plasma membrane 94.82 94.18
Os03t0105600-01 Rice plasma membrane 94.82 94.18
Bra020912.1-P Field mustard cytosol 94.59 94.17
CDX94014 Canola cytosol 94.59 94.17
Os01t0282800-02 Rice plasma membrane 94.59 93.96
CDY31428 Canola cytosol 94.37 93.95
CDX76444 Canola cytosol 94.37 93.95
AT4G20890.1 Thale cress cytosol 93.92 93.92
Bra038795.1-P Field mustard cytosol 93.92 93.71
AT5G44340.1 Thale cress cytosol 93.69 93.69
CDX82788 Canola cytosol 93.92 93.5
CDX79013 Canola cytosol 93.92 93.5
CDY60599 Canola cytosol 93.24 93.03
CDX96965 Canola cytosol 93.02 92.81
Bra027544.1-P Field mustard cytosol 93.02 92.81
Bra039506.1-P Field mustard cytosol 93.02 92.6
CDY14924 Canola cytosol 93.02 92.6
CDY13108 Canola cytosol 92.79 92.58
CDY69221 Canola cytosol 92.79 92.58
Bra013481.1-P Field mustard cytosol 92.79 92.38
Bra033737.1-P Field mustard cytosol 92.57 92.36
CDY49002 Canola cytosol 92.57 92.36
Os03t0661300-01 Rice plasma membrane 92.57 92.15
Bra005395.1-P Field mustard cytosol 80.41 88.59
HORVU5Hr1G100900.2 Barley cytosol 97.3 85.38
GSMUA_Achr6P19990_001 Banana cytosol 79.5 85.27
Os03t0726100-01 Rice nucleus 42.57 41.91
Os11t0247300-01 Rice plasma membrane 42.12 41.46
Os07t0574800-02 Rice plasma membrane 41.67 41.11
Os03t0219300-01 Rice cytosol, plasma membrane, plastid 40.99 40.53
Os05t0156600-01 Rice cytosol 35.14 33.26
Os03t0780800-01 Rice cytosol 2.25 4.22
Protein Annotations
Gene3D:1.10.287.600MapMan:20.1.1.2Gene3D:3.30.1330.20Gene3D:3.40.50.1440EntrezGene:4334309ProteinID:AAK09229.1
ProteinID:ABF99177.1ProteinID:ABF99178.1EMBL:AK120180ProteinID:BAF13365.1ProteinID:BAS86674.1InterPro:Beta-tubulin_BS
InterPro:Beta_tubulinncoils:CoilEMBL:D13224GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005198GO:GO:0005200GO:GO:0005488GO:GO:0005525GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005856GO:GO:0005874GO:GO:0007010
GO:GO:0007017GO:GO:0008150GO:GO:0009987GO:GO:0016043GO:GO:0016787InterPro:IPR023123
InterPro:IPR036525InterPro:IPR037103EnsemblPlantsGene:Os03g0780600EnsemblPlants:Os03t0780600-01UniProt:P37832PFAM:PF00091
PFAM:PF03953PRINTS:PR01161PRINTS:PR01163ScanProsite:PS00227ScanProsite:PS00228PANTHER:PTHR11588
PANTHER:PTHR11588:SF146SMART:SM00864SMART:SM00865SUPFAM:SSF52490SUPFAM:SSF55307InterPro:Tub_FtsZ_C
InterPro:TubulinInterPro:Tubulin/FtsZ_2-layer-sand-domInterPro:Tubulin/FtsZ_C_sfInterPro:Tubulin/FtsZ_GTPase_sfInterPro:Tubulin_CInterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPaseUniParc:UPI00000A3265RefSeq:XP_015631085.1SEG:seg::
Description
BETA-TUBULIN 7Tubulin beta-1 chain (Beta-1 tubulin). (Os03t0780600-01);Non-protein coding transcript. (Os03t0780600-02)
Coordinates
chr3:+:32371758..32374697
Molecular Weight (calculated)
49824.9 Da
IEP (calculated)
4.492
GRAVY (calculated)
-0.352
Length
444 amino acids
Sequence
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICDEHGV DATGRYAGDS DLQLERINVY YNEASGGRYV PRAVLMDLEP GTMDSVRSGP FGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLATP TFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK SSVCDIPPRG LKMAATFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEYEDEEEE AEAE
Best Arabidopsis Sequence Match ( AT1G20010.1 )
(BLAST)
001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DSTGRYSGDT ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PFGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDSKNM
301: MCAADPRHGR YLTASAIFRG QMSTKEVDEQ ILNIQNKNSS YFVEWIPNNV KSSVCDIPPK GLKMAATFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV AEYQQYQDAT ADEEGEYDVE EEEEGDYET
Arabidopsis Description
TUBB5Tubulin beta-5 chain [Source:UniProtKB/Swiss-Prot;Acc:P29513]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.