Factsheet for Os03t0726100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 15276429
plasma membrane: 19502382
nucleus: 19621931
nucleus: 23303719
extracellular: 24083427
plasma membrane: 28056797

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 15276429 doi

MM Khan, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, Kannondai 2-1-2, Tsukuba 305-8602, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0247300-01	Rice	plasma membrane	96.9	96.9
GSMUA_Achr7P17960_001	Banana	cytosol	84.26	95.72
Os07t0574800-02	Rice	plasma membrane	91.57	91.78
Os03t0219300-01	Rice	cytosol, plasma membrane, plastid	86.03	86.41
Os06t0671900-01	Rice	plasma membrane	42.79	43.27
Os05t0413200-01	Rice	plasma membrane	42.13	42.79
Os02t0167300-01	Rice	plasma membrane	42.35	42.73
Os03t0105600-01	Rice	plasma membrane	42.35	42.73
Os03t0780600-01	Rice	plastid	41.91	42.57
Os01t0805900-01	Rice	plasma membrane	42.13	42.51
Os03t0661300-01	Rice	plasma membrane	41.91	42.38
Os01t0282800-02	Rice	plasma membrane	41.91	42.28
Os05t0156600-01	Rice	cytosol	31.04	29.85
Os03t0780800-01	Rice	cytosol	0.89	1.69

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	EntrezGene:4333966	ProteinID:AAS07163.1
ProteinID:AAT77077.1	ProteinID:ABF98642.1	InterPro:Alpha_tubulin	ProteinID:BAF13046.1	ProteinID:BAS86171.1	ncoils:Coil
EMBL:DQ683569	ProteinID:EAZ28437.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	EMBL:JN944354	EnsemblPlantsGene:Os03g0726100	EnsemblPlants:Os03t0726100-01	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	UniProt:Q75GI3
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000003759B	RefSeq:XP_015630335.1	SEG:seg	:	:	:

Description

TUBULIN ALPHA-3 CHAINSimilar to Tubulin alpha-1 chain (Alpha-1 tubulin). (Os03t0726100-01);Similar to Alpha-tubulin. (Os03t0726100-02)

Coordinates

chr3:+:29526118..29529001

Molecular Weight (calculated)

49821.8 Da

IEP (calculated)

4.643

GRAVY (calculated)

-0.214

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QADGQMPSDR TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GCYRQLFHPE QLINGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP SVVPSGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAESD ENEDGDDGDE Y

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.