CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50974	Canola	cytosol	99.76	90.89
CDY45043	Canola	cytosol	99.76	90.89
CDY28123	Canola	cytosol	99.76	90.89
CDY03583	Canola	cytosol	99.76	90.89
CDY29334	Canola	cytosol	95.37	90.72
Bra039648.1-P	Field mustard	cytosol	99.51	90.67
CDY66630	Canola	cytosol	96.1	90.57
PGSC0003DMT400085117	Potato	cytosol	62.2	88.85
KRH35640	Soybean	cytosol, nucleus	96.34	87.97
KRG91143	Soybean	nucleus	96.1	87.75
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	95.85	87.33
Solyc08g006890.2.1	Tomato	cytosol	95.85	87.14
PGSC0003DMT400022574	Potato	cytosol	95.61	87.11
Solyc02g087880.2.1	Tomato	cytosol, unclear	95.12	86.67
PGSC0003DMT400003336	Potato	cytosol	95.12	86.67
PGSC0003DMT400030110	Potato	cytosol	95.12	86.47
CDY42295	Canola	cytosol	92.44	84.22
CDY42294	Canola	cytosol	92.44	84.22
CDX92501	Canola	cytosol	92.2	84.0
CDX92502	Canola	cytosol	92.2	84.0
CDX70890	Canola	cytosol	91.95	83.78
CDY44942	Canola	cytosol	91.95	83.78
CDY44941	Canola	cytosol	91.95	83.78
CDX88875	Canola	cytosol	91.95	83.78
CDY35856	Canola	cytosol	24.63	67.79
CDY46272	Canola	cytosol	42.68	60.55
CDY05559	Canola	mitochondrion	73.41	59.84
CDY60599	Canola	cytosol	43.9	40.45
CDX96965	Canola	cytosol	43.66	40.22
CDY14924	Canola	cytosol	43.66	40.13
CDY31638	Canola	cytosol	43.41	40.09
CDY69221	Canola	cytosol	43.41	40.0
CDY13108	Canola	cytosol	43.41	40.0
CDX82788	Canola	cytosol	43.41	39.91
CDY31428	Canola	cytosol	43.41	39.91
CDX76444	Canola	cytosol	43.41	39.91
CDX79013	Canola	cytosol	43.41	39.91
CDY51360	Canola	cytosol	43.66	39.87
CDX97877	Canola	cytosol	43.66	39.87
CDY45452	Canola	cytosol	43.66	39.87
CDX87664	Canola	cytosol	43.41	39.82
CDX73198	Canola	cytosol	43.41	39.82
CDX84345	Canola	cytosol	43.66	39.78
CDX86102	Canola	plasma membrane	43.66	39.78
CDY38073	Canola	cytosol	43.66	39.78
CDY00319	Canola	cytosol	43.66	39.78
CDY49002	Canola	cytosol	43.17	39.78
CDX84283	Canola	cytosol	43.17	39.69
CDY53366	Canola	cytosol	43.41	39.64
CDX98679	Canola	cytosol	42.93	39.46
CDX94014	Canola	cytosol	42.93	39.46
CDX80390	Canola	cytosol	42.93	39.2
CDY67078	Canola	cytosol	37.56	39.09
CDX69693	Canola	cytosol	43.41	38.61
CDY21784	Canola	cytosol	40.0	38.41
CDX99087	Canola	cytosol	40.0	38.41
CDX88051	Canola	cytosol	39.27	37.79
CDX97180	Canola	cytosol	43.41	37.01
CDX68422	Canola	cytosol	23.66	33.8
CDY11370	Canola	cytosol	32.44	28.12
CDX71723	Canola	cytosol	32.44	28.12

Protein Annotations

MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078GIM9	UniProt:A0A078GIM9	InterPro:Alpha_tubulin
EnsemblPlants:CDY25017	ProteinID:CDY25017	ProteinID:CDY25017.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00028840001	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EE71DB	SEG:seg	:

Description

BnaC02g39910DTubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A078GIM9]

Coordinates

chrLK032167:-:321311..323643

Molecular Weight (calculated)

45317.4 Da

IEP (calculated)

4.580

GRAVY (calculated)

-0.236

Length

410 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG IDHKFDLMYA KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG
401: DDEDDEGEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.