Factsheet for PGSC0003DMT400030110

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	97.12	97.33
PGSC0003DMT400022574	Potato	cytosol	96.45	96.67
CDY66630	Canola	cytosol	93.13	96.55
CDY29334	Canola	cytosol	91.57	95.82
AT1G50010.1	Thale cress	cytosol	95.34	95.56
PGSC0003DMT400003336	Potato	cytosol	95.34	95.56
CDY45043	Canola	cytosol	95.34	95.56
AT1G04820.1	Thale cress	cytosol	95.34	95.56
CDY03583	Canola	cytosol	95.34	95.56
Bra014232.1-P	Field mustard	cytosol	95.34	95.56
CDY28123	Canola	cytosol	95.12	95.33
AT4G14960.2	Thale cress	cytosol	95.12	95.33
CDY50974	Canola	cytosol	95.12	95.33
CDY25017	Canola	cytosol	86.47	95.12
Bra018825.1-P	Field mustard	cytosol	94.9	95.11
Bra039648.1-P	Field mustard	cytosol	94.9	95.11
KRG91143	Soybean	nucleus	94.68	95.1
KRH35640	Soybean	cytosol, nucleus	94.68	95.1
PGSC0003DMT400012732	Potato	cytosol	51.88	93.23
PGSC0003DMT400078710	Potato	cytosol	92.24	92.24
PGSC0003DMT400010906	Potato	cytosol	91.13	91.54
PGSC0003DMT400085117	Potato	cytosol	56.98	89.55
PGSC0003DMT400077781	Potato	cytosol	49.22	54.01
PGSC0003DMT400046148	Potato	cytosol	51.0	53.12
PGSC0003DMT400053750	Potato	cytosol	42.57	43.15
PGSC0003DMT400072466	Potato	cytosol	42.57	42.95
PGSC0003DMT400075425	Potato	cytosol	42.79	42.79
PGSC0003DMT400078206	Potato	cytosol	42.13	42.6
PGSC0003DMT400028800	Potato	cytosol	42.13	42.51
PGSC0003DMT400049212	Potato	cytosol	42.13	42.41
PGSC0003DMT400076938	Potato	cytosol	41.91	42.28
PGSC0003DMT400037093	Potato	cytosol	41.69	42.06
PGSC0003DMT400025739	Potato	cytosol	41.91	41.91
PGSC0003DMT400014466	Potato	cytosol	25.06	40.21
PGSC0003DMT400039263	Potato	cytosol	30.16	28.69

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:ABB72803	ProteinID:ABB72803.1
InterPro:Alpha_tubulin	ncoils:Coil	EMBL:DQ268844	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123
InterPro:IPR036525	InterPro:IPR037103	UniProt:M1ATR5	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400011537
PGSC:PGSC0003DMG400011537	EnsemblPlants:PGSC0003DMT400030110	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588
PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002957607	SEG:seg	:	:	:

Description

Alpha-tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400011537]

Coordinates

chr12:+:56018783..56025012

Molecular Weight (calculated)

49794.9 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.196

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLSDNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPHVSTS VVEPYNSVLS THSLLEHTDV
201: AILLDNEAIY DICKRSLDIE RPTYTNLNRL ISQVISSLTT SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMVKCDPRHG KYMACCLMFR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAELE DEDGGDEGDE Y

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.