Factsheet for PGSC0003DMT400077781

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046148	Potato	cytosol	92.7	87.99
KRH04356	Soybean	cytosol	32.6	53.39
GSMUA_Achr8P15410_001	Banana	cytosol	29.2	50.42
PGSC0003DMT400012732	Potato	cytosol	30.66	50.2
PGSC0003DMT400078710	Potato	cytosol	54.26	49.45
PGSC0003DMT400022574	Potato	cytosol	54.01	49.33
PGSC0003DMT400030110	Potato	cytosol	54.01	49.22
PGSC0003DMT400010906	Potato	cytosol	53.77	49.22
PGSC0003DMT400003336	Potato	cytosol	53.28	48.67
KRH04357	Soybean	cytosol	19.71	47.65
PGSC0003DMT400085117	Potato	cytosol	33.09	47.39
GSMUA_Achr6P29670_001	Banana	cytosol	24.09	44.59
PGSC0003DMT400075425	Potato	cytosol	31.87	29.05
PGSC0003DMT400072466	Potato	cytosol	31.39	28.86
PGSC0003DMT400053750	Potato	cytosol	31.14	28.76
PGSC0003DMT400076938	Potato	cytosol	31.14	28.64
PGSC0003DMT400078206	Potato	cytosol	30.9	28.48
PGSC0003DMT400025739	Potato	cytosol	31.14	28.38
PGSC0003DMT400049212	Potato	cytosol	30.9	28.35
PGSC0003DMT400028800	Potato	cytosol	30.66	28.19
PGSC0003DMT400037093	Potato	cytosol	30.66	28.19
PGSC0003DMT400014466	Potato	cytosol	18.49	27.05
PGSC0003DMT400039263	Potato	cytosol	24.82	21.52

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Alpha_tubulin	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	UniProt:M1CYW7	PFAM:PF00091
PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400030257	PGSC:PGSC0003DMG400030257	EnsemblPlants:PGSC0003DMT400077781	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00029559C8	SEG:seg	:

Description

Alpha tubulin 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030257]

Coordinates

chr3:+:6274027..6276396

Molecular Weight (calculated)

46613.6 Da

IEP (calculated)

4.319

GRAVY (calculated)

-0.290

Length

411 amino acids

Sequence
(BLAST)

001: MMKQEEEYKK EFISIHIGQT GINLGNSCWE LYCLEHGIQP DGMRSTTEDE DDDDRDYRFR TFFSETSSGK FVPRALFIDL EPIGGKIIDE CLDRIRKLVD
101: DCSNLSGFVI FNAVSGGTGS GFCSLLLESL STEYEPKEKI AFTVYPSPDD EFSPSILDSY NTILASYSLN EHSNVTLMFD NVSVYDICRR SLDIENPTYV
201: NMNRLVSQAI SSLTVSMRFE GSTFNQNLRS FCDSIIGFAG CSYVPVLSAA KEVQHKQHSF VELTNAALEP SSYMVKHDPC KGNYMNNLIV YRGDDVDFDD
301: VDNAVSMART RTGFDYFDTA YRSGINYVPV TVYPGGDLAT VQREVCVVSC TTSIQDVFTR ISHKFNQMYA KKDFLHSYFC EGMEEYEFSE AYEEIAIKLV
401: KLCQVYENED P

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.