Factsheet for PGSC0003DMT400012732

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04356	Soybean	cytosol	90.84	90.84
GSMUA_Achr8P15410_001	Banana	cytosol	86.06	90.76
GSMUA_Achr6P29670_001	Banana	cytosol	74.9	84.68
PGSC0003DMT400085117	Potato	cytosol	63.35	55.4
PGSC0003DMT400022574	Potato	cytosol	94.42	52.67
PGSC0003DMT400030110	Potato	cytosol	93.23	51.88
PGSC0003DMT400003336	Potato	cytosol	92.83	51.78
PGSC0003DMT400078710	Potato	cytosol	90.84	50.55
PGSC0003DMT400010906	Potato	cytosol	87.25	48.78
PGSC0003DMT400046148	Potato	cytosol	53.39	30.95
PGSC0003DMT400077781	Potato	cytosol	50.2	30.66
PGSC0003DMT400072466	Potato	cytosol	45.42	25.5
PGSC0003DMT400053750	Potato	cytosol	45.02	25.39
PGSC0003DMT400078206	Potato	cytosol	44.62	25.11
PGSC0003DMT400028800	Potato	cytosol	44.62	25.06
PGSC0003DMT400025739	Potato	cytosol	44.62	24.83
PGSC0003DMT400075425	Potato	cytosol	44.62	24.83
PGSC0003DMT400076938	Potato	cytosol	44.22	24.83
PGSC0003DMT400037093	Potato	cytosol	43.82	24.61
PGSC0003DMT400049212	Potato	cytosol	43.82	24.55
PGSC0003DMT400039263	Potato	cytosol	36.26	19.2
PGSC0003DMT400014466	Potato	cytosol	14.74	13.17
KRH04357	Soybean	cytosol	0.4	0.59

Protein Annotations

Gene3D:3.40.50.1440	MapMan:35.1	InterPro:Alpha_tubulin	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010
GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR036525
UniProt:M1A1P4	PFAM:PF00091	EnsemblPlantsGene:PGSC0003DMG400004962	PGSC:PGSC0003DMG400004962	EnsemblPlants:PGSC0003DMT400012732	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864	SUPFAM:SSF52490
InterPro:Tubulin	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000296A255	SEG:seg

Description

Alpha-tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400004962]

Coordinates

chr4:+:66033793..66036547

Molecular Weight (calculated)

27579.9 Da

IEP (calculated)

5.582

GRAVY (calculated)

-0.050

Length

251 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AILLDNEAIY DICRRSLDIE RPTYTNLNRL ISQVLFVSSY TVRLTAKFLL F

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.