Factsheet for PGSC0003DMT400028800

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040052

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62690.1	PGSC0003DMT400040052	AT3G50960.1	18390592
AT5G62700.1	PGSC0003DMT400040052	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049212	Potato	cytosol	97.99	97.77
CDY67078	Canola	cytosol	85.91	97.46
Solyc10g085020.1.1	Tomato	nucleus	98.43	96.92
PGSC0003DMT400078206	Potato	cytosol	95.75	95.96
CDY38073	Canola	cytosol	96.42	95.78
CDY00319	Canola	cytosol	96.42	95.78
CDX86102	Canola	plasma membrane	96.42	95.78
CDX84345	Canola	cytosol	96.42	95.78
Bra019493.1-P	Field mustard	cytosol	96.42	95.78
Bra010114.1-P	Field mustard	cytosol	96.42	95.78
Bra018184.1-P	Field mustard	cytosol	96.2	95.77
AT5G62690.1	Thale cress	cytosol	96.2	95.56
AT5G62700.1	Thale cress	cytosol	96.2	95.56
CDX99087	Canola	cytosol	91.28	95.55
CDY21784	Canola	cytosol	91.28	95.55
Bra033796.1-P	Field mustard	cytosol	95.97	95.55
VIT_08s0007g01630.t01	Wine grape	cytosol	95.53	95.53
VIT_06s0004g05870.t01	Wine grape	cytosol	95.08	95.29
PGSC0003DMT400076938	Potato	cytosol	95.08	95.08
PGSC0003DMT400072466	Potato	cytosol	95.08	95.08
PGSC0003DMT400053750	Potato	cytosol	94.63	95.06
PGSC0003DMT400037093	Potato	cytosol	94.85	94.85
Zm00001d040509_P001	Maize	cytosol	46.98	94.59
PGSC0003DMT400014466	Potato	cytosol	58.61	93.24
PGSC0003DMT400025739	Potato	cytosol	92.62	91.8
PGSC0003DMT400075425	Potato	cytosol	91.72	90.91
Zm00001d008216_P002	Maize	cytosol	48.1	89.96
PGSC0003DMT400012732	Potato	cytosol	25.06	44.62
PGSC0003DMT400030110	Potato	cytosol	42.51	42.13
PGSC0003DMT400022574	Potato	cytosol	42.06	41.78
PGSC0003DMT400003336	Potato	cytosol	42.06	41.78
PGSC0003DMT400085117	Potato	cytosol	26.62	41.46
PGSC0003DMT400010906	Potato	cytosol	41.61	41.43
PGSC0003DMT400078710	Potato	cytosol	41.61	41.24
PGSC0003DMT400039263	Potato	cytosol	35.57	33.54
PGSC0003DMT400046148	Potato	cytosol	30.2	31.18
PGSC0003DMT400077781	Potato	cytosol	28.19	30.66

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:102585315	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M1ARQ6	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400011088	PGSC:PGSC0003DMG400011088
EnsemblPlants:PGSC0003DMT400028800	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000294FF85	RefSeq:XP_006339000.1	SEG:seg	:	:

Description

Tubulin beta chain [Source:PGSC_GENE;Acc:PGSC0003DMG400011088]

Coordinates

chr10:+:54080341..54082258

Molecular Weight (calculated)

50258.3 Da

IEP (calculated)

4.453

GRAVY (calculated)

-0.360

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYAGDA DLQLERINVY YNEATCGRFV PRAVLMDLEP GTMDSIRSGT YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGEYYED EDDAQEE

Best Arabidopsis Sequence Match ( AT5G23860.2 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ

Arabidopsis Description

TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.