Factsheet for VIT_08s0007g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0023g02390.t01
VIT_14s0036g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G62690.1	VIT_04s0023g02390.t01	AT3G50960.1	18390592
AT5G62690.1	VIT_14s0036g00970.t01	AT3G50960.1	18390592
AT5G62700.1	VIT_04s0023g02390.t01	AT3G50960.1	18390592
AT5G62700.1	VIT_14s0036g00970.t01	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67078	Canola	cytosol	85.91	97.46
Os03t0105600-01	Rice	plasma membrane	96.64	96.64
EER95686	Sorghum	cytosol	96.42	96.64
VIT_02s0025g03680.t01	Wine grape	cytosol	96.2	96.2
Solyc10g086760.1.1	Tomato	nucleus	96.2	95.98
TraesCS5A01G534300.1	Wheat	cytosol	95.97	95.97
AT5G62700.1	Thale cress	cytosol	96.42	95.78
AT5G62690.1	Thale cress	cytosol	96.42	95.78
PGSC0003DMT400049212	Potato	cytosol	95.97	95.76
TraesCSU01G137900.1	Wheat	cytosol	95.97	95.76
VIT_06s0004g05870.t01	Wine grape	cytosol	95.53	95.74
CDY38073	Canola	cytosol	96.2	95.56
CDX84345	Canola	cytosol	96.2	95.56
Bra019493.1-P	Field mustard	cytosol	96.2	95.56
CDX86102	Canola	plasma membrane	96.2	95.56
Bra010114.1-P	Field mustard	cytosol	96.2	95.56
CDY00319	Canola	cytosol	96.2	95.56
Bra018184.1-P	Field mustard	cytosol	95.97	95.55
VIT_16s0050g00380.t01	Wine grape	cytosol	95.97	95.55
PGSC0003DMT400028800	Potato	cytosol	95.53	95.53
Bra033796.1-P	Field mustard	cytosol	95.75	95.32
CDY21784	Canola	cytosol	91.05	95.32
CDX99087	Canola	cytosol	91.05	95.32
TraesCS4B01G366500.1	Wheat	cytosol	95.53	95.1
VIT_06s0009g02020.t01	Wine grape	cytosol	94.85	95.07
Zm00001d040509_P001	Maize	cytosol	46.98	94.59
Solyc10g085020.1.1	Tomato	nucleus	95.97	94.49
VIT_08s0040g00980.t01	Wine grape	cytosol	94.18	94.18
VIT_10s0003g05320.t01	Wine grape	cytosol	93.74	94.16
VIT_17s0000g02450.t01	Wine grape	cytosol	93.29	93.71
VIT_18s0001g14360.t01	Wine grape	cytosol	92.84	92.63
VIT_02s0025g03540.t01	Wine grape	cytosol	89.93	90.54
Zm00001d008216_P002	Maize	cytosol	48.1	89.96
VIT_00s0373g00010.t01	Wine grape	cytosol	32.21	44.72
VIT_14s0108g00440.t01	Wine grape	cytosol	43.18	42.89
VIT_03s0088g00380.t01	Wine grape	cytosol	42.95	42.67
VIT_18s0001g08250.t01	Wine grape	cytosol	42.95	42.57
VIT_06s0004g00480.t01	Wine grape	cytosol	42.28	42.09
VIT_08s0007g07260.t01	Wine grape	cytosol	41.16	41.26
VIT_00s1322g00010.t01	Wine grape	cytosol	24.61	40.0
VIT_15s0046g01350.t01	Wine grape	cytosol	34.9	32.91

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100258042	wikigene:100258042	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
EMBL:AM444949	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CAN76383	ProteinID:CAN76383.1	ProteinID:CCB55523
ProteinID:CCB55523.1	ncoils:Coil	UniProt:F6HKY1	EMBL:FN595991	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100258042	wikigene:LOC100258042	PFAM:PF00091
PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC59520
InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015C96C6	ArrayExpress:VIT_08s0007g01630	EnsemblPlantsGene:VIT_08s0007g01630	EnsemblPlants:VIT_08s0007g01630.t01
unigene:Vvi.18916	unigene:Vvi.9551	RefSeq:XP_002276835	RefSeq:XP_002276835.1	RefSeq:XP_010654216.1	SEG:seg

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6HKY1]

Coordinates

chr8:-:15715447..15717154

Molecular Weight (calculated)

50358.7 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.337

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DVTGRYQGDS ELQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSIRSGM YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDAVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQI LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA DEEGDYEDEE EEELHDM

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.