Factsheet for VIT_02s0025g03680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95686	Sorghum	cytosol	97.32	97.53
TraesCS5A01G534300.1	Wheat	cytosol	97.32	97.32
TraesCSU01G137900.1	Wheat	cytosol	97.32	97.1
Os03t0105600-01	Rice	plasma membrane	97.09	97.09
CDX80390	Canola	cytosol	97.32	96.88
Bra009710.1-P	Field mustard	cytosol	97.32	96.88
Zm00001d040509_P001	Maize	cytosol	48.1	96.85
CDX88051	Canola	cytosol	92.17	96.71
TraesCS4B01G366500.1	Wheat	cytosol	97.09	96.66
VIT_16s0050g00380.t01	Wine grape	cytosol	96.87	96.44
VIT_06s0009g02020.t01	Wine grape	cytosol	96.2	96.41
Solyc03g025730.2.1	Tomato	nucleus	95.97	96.4
VIT_08s0007g01630.t01	Wine grape	cytosol	96.2	96.2
PGSC0003DMT400037093	Potato	cytosol	96.2	96.2
Solyc06g035970.2.1	Tomato	nucleus	95.97	95.97
PGSC0003DMT400076938	Potato	cytosol	95.75	95.75
VIT_08s0040g00980.t01	Wine grape	cytosol	95.75	95.75
VIT_06s0004g05870.t01	Wine grape	cytosol	95.53	95.74
VIT_10s0003g05320.t01	Wine grape	cytosol	94.41	94.83
VIT_17s0000g02450.t01	Wine grape	cytosol	93.96	94.38
VIT_18s0001g14360.t01	Wine grape	cytosol	93.06	92.86
Zm00001d008216_P002	Maize	cytosol	49.22	92.05
VIT_02s0025g03540.t01	Wine grape	cytosol	91.05	91.67
VIT_00s0373g00010.t01	Wine grape	cytosol	32.66	45.34
VIT_14s0108g00440.t01	Wine grape	cytosol	43.18	42.89
VIT_03s0088g00380.t01	Wine grape	cytosol	42.95	42.67
VIT_18s0001g08250.t01	Wine grape	cytosol	42.95	42.57
VIT_06s0004g00480.t01	Wine grape	cytosol	42.28	42.09
VIT_08s0007g07260.t01	Wine grape	cytosol	41.16	41.26
VIT_00s1322g00010.t01	Wine grape	cytosol	24.16	39.27
VIT_15s0046g01350.t01	Wine grape	cytosol	34.68	32.7

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100247828	wikigene:100247828	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440
InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin	ProteinID:CCB58358	ProteinID:CCB58358.1	ncoils:Coil	UniProt:F6HUD5
EMBL:FN596251	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EntrezGene:LOC100247828	wikigene:LOC100247828	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01163
ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF264	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	TIGR:TC57118	TIGR:TC62643	TIGR:TC62809	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI00015CD454	ArrayExpress:VIT_02s0025g03680	EnsemblPlantsGene:VIT_02s0025g03680	EnsemblPlants:VIT_02s0025g03680.t01	unigene:Vvi.17500
unigene:Vvi.24932	unigene:Vvi.5732	RefSeq:XP_002271992	RefSeq:XP_002271992.1	SEG:seg	:

Description

Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:F6HUD5]

Coordinates

chr2:-:3205205..3208677

Molecular Weight (calculated)

50294.3 Da

IEP (calculated)

4.488

GRAVY (calculated)

-0.379

Length

447 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYHGDS DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EYQEDEA

Best Arabidopsis Sequence Match ( AT5G62700.1 )
(BLAST)

001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DPTGRYTGDS DLQLERINVY YNEASCGRFV PRAVLMDLEP GTMDSLRSGP YGQTFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRSLTVPELT QQMWDSKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM LNVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEGDYEDEE EGEYQQEEEY

Arabidopsis Description

TUBB3Tubulin beta-2 chain [Source:UniProtKB/Swiss-Prot;Acc:Q56YW9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.