Factsheet for VIT_18s0001g08250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0373g00010.t01	Wine grape	cytosol	70.95	99.38
VIT_03s0088g00380.t01	Wine grape	cytosol	98.45	98.67
VIT_00s1322g00010.t01	Wine grape	cytosol	60.09	98.55
VIT_14s0108g00440.t01	Wine grape	cytosol	98.0	98.22
KRH62139	Soybean	nucleus	98.0	97.79
KRH52851	Soybean	cytosol, nucleus	97.78	97.57
VIT_06s0004g00480.t01	Wine grape	cytosol	92.24	92.65
VIT_08s0007g07260.t01	Wine grape	cytosol	85.14	86.1
VIT_17s0000g02450.t01	Wine grape	cytosol	42.79	43.37
VIT_06s0004g05870.t01	Wine grape	cytosol	42.79	43.27
VIT_10s0003g05320.t01	Wine grape	cytosol	42.57	43.15
VIT_06s0009g02020.t01	Wine grape	cytosol	42.57	43.05
VIT_08s0040g00980.t01	Wine grape	cytosol	42.57	42.95
VIT_08s0007g01630.t01	Wine grape	cytosol	42.57	42.95
VIT_02s0025g03680.t01	Wine grape	cytosol	42.57	42.95
VIT_02s0025g03540.t01	Wine grape	cytosol	41.69	42.34
VIT_18s0001g14360.t01	Wine grape	cytosol	41.91	42.19
VIT_16s0050g00380.t01	Wine grape	cytosol	41.69	41.87
VIT_15s0046g01350.t01	Wine grape	cytosol	30.6	29.11

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100247081	wikigene:100247081	EntrezGene:100854977	wikigene:100854977	MapMan:20.1.1.1
Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A5BZF5	EMBL:AM476757	InterPro:Alpha_tubulin	ProteinID:CAN77412
ProteinID:CAN77412.1	ProteinID:CCB45702	ProteinID:CCB45702.1	ncoils:Coil	EMBL:FN595227	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100247081	wikigene:LOC100247081
EntrezGene:LOC100854977	wikigene:LOC100854977	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161	PRINTS:PR01162
ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490
SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001521F72	ArrayExpress:VIT_18s0001g08250	EnsemblPlantsGene:VIT_18s0001g08250
EnsemblPlants:VIT_18s0001g08250.t01	unigene:Vvi.5756	RefSeq:XP_002285563	RefSeq:XP_002285563.1	RefSeq:XP_010664458.1	SEG:seg

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A5BZF5]

Coordinates

chr18:+:6747241..6749732

Molecular Weight (calculated)

49593.6 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.196

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GAYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDNKFDLMYS
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAESA EGDEGDEGDE Y

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.