Factsheet for VIT_00s0373g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P00620_001	Banana	cytosol	84.47	82.67
GSMUA_Achr7P08080_001	Banana	cytosol	80.43	82.48
GSMUA_Achr2P17250_001	Banana	cytosol	84.16	82.37
VIT_03s0088g00380.t01	Wine grape	cytosol	99.69	71.33
VIT_18s0001g08250.t01	Wine grape	cytosol	99.38	70.95
VIT_14s0108g00440.t01	Wine grape	cytosol	99.07	70.89
VIT_06s0004g00480.t01	Wine grape	cytosol	93.79	67.26
VIT_08s0007g07260.t01	Wine grape	cytosol	87.58	63.23
VIT_00s1322g00010.t01	Wine grape	cytosol	45.34	53.09
OQU78051	Sorghum	cytosol	59.63	47.52
VIT_06s0009g02020.t01	Wine grape	cytosol	45.65	32.96
VIT_06s0004g05870.t01	Wine grape	cytosol	45.65	32.96
VIT_08s0040g00980.t01	Wine grape	cytosol	45.65	32.89
VIT_10s0003g05320.t01	Wine grape	cytosol	45.34	32.81
VIT_17s0000g02450.t01	Wine grape	cytosol	45.34	32.81
VIT_02s0025g03680.t01	Wine grape	cytosol	45.34	32.66
VIT_08s0007g01630.t01	Wine grape	cytosol	44.72	32.21
VIT_02s0025g03540.t01	Wine grape	cytosol	44.1	31.98
VIT_18s0001g14360.t01	Wine grape	cytosol	44.41	31.92
VIT_16s0050g00380.t01	Wine grape	cytosol	44.41	31.85
VIT_15s0046g01350.t01	Wine grape	cytosol	33.85	23.0

Protein Annotations

EntrezGene:100255913	wikigene:100255913	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Alpha_tubulin
ProteinID:CCB52392	ProteinID:CCB52392.1	ncoils:Coil	UniProt:F6HJJ2	EMBL:FN595777	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR036525	InterPro:IPR037103	EntrezGene:LOC100255913	wikigene:LOC100255913	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0002108DE1	ArrayExpress:VIT_00s0373g00010	EnsemblPlantsGene:VIT_00s0373g00010
EnsemblPlants:VIT_00s0373g00010.t01	unigene:Vvi.33	RefSeq:XP_002263822	RefSeq:XP_002263822.2	SEG:seg	:

Description

Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:F6HJJ2]

Coordinates

chrUn:-:26252367..26255365

Molecular Weight (calculated)

35402.1 Da

IEP (calculated)

5.352

GRAVY (calculated)

-0.122

Length

322 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TIGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GD

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.