Factsheet for VIT_14s0036g00970.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01
VIT_08s0007g01630.t01
VIT_10s0003g05320.t01
VIT_18s0001g14360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50960.1	VIT_18s0001g14360.t01	AT1G20010.1	18390592
AT3G50960.1	VIT_10s0003g05320.t01	AT5G44340.1	18390592
AT3G50960.1	VIT_08s0007g01630.t01	AT5G62690.1	18390592
AT3G50960.1	VIT_08s0007g01630.t01	AT5G62700.1	18390592
AT5G66410.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g02390.t01	Wine grape	cytosol	91.8	97.39
Solyc02g062540.2.1	Tomato	cytosol	75.0	80.26
KRH69862	Soybean	cytosol	75.41	79.65
PGSC0003DMT400040052	Potato	cytosol	74.18	79.39
KRH17436	Soybean	cytosol, extracellular	75.0	79.22
Bra036844.1-P	Field mustard	cytosol	72.54	76.96
CDX77968	Canola	cytosol	72.54	76.96
CDY26529	Canola	cytosol	72.54	76.96
AT3G50960.1	Thale cress	cytosol	72.13	76.52
AT5G66410.1	Thale cress	cytosol	71.72	76.09
Os05t0255600-01	Rice	cytosol	71.72	76.09
CDX73765	Canola	cytosol	71.72	76.09
Os11t0604700-00	Rice	cytosol	71.31	75.65
CDY57635	Canola	cytosol	70.49	74.78
EES08806	Sorghum	cytosol	70.08	74.67
Zm00001d007600_P001	Maize	cytosol	70.08	74.67
GSMUA_Achr2P14840_001	Banana	cytosol	63.52	74.16
Zm00001d048892_P001	Maize	extracellular	69.26	73.8
Bra038875.1-P	Field mustard	nucleus	66.8	73.42
TraesCS7B01G044100.1	Wheat	cytosol	66.8	70.87
HORVU7Hr1G029120.1	Barley	golgi	30.74	66.96
Zm00001d030574_P001	Maize	cytosol, extracellular, plastid	29.1	62.83
Zm00001d033260_P001	Maize	plastid	30.74	48.7
Zm00001d025839_P001	Maize	cytosol	32.38	47.02
Zm00001d007720_P003	Maize	endoplasmic reticulum, extracellular, plastid	24.18	42.45
Zm00001d009423_P001	Maize	endoplasmic reticulum, extracellular, plastid	24.18	42.45
VIT_03s0091g00380.t01	Wine grape	cytosol	30.33	34.91

Protein Annotations

EntrezGene:100242528	wikigene:100242528	MapMan:20.1.2.3	Gene3D:3.40.30.10	EMBL:AM483532	ProteinID:CAN68685
ProteinID:CAN68685.1	ProteinID:CBI22351	ProteinID:CBI22351.3	UniProt:E0CU93	EMBL:FN595241	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008479	GO:GO:0008616	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0019725	GO:GO:0045454	InterPro:IPR013766	EntrezGene:LOC100242528	wikigene:LOC100242528
PFAM:PF00085	PANTHER:PTHR21148	PANTHER:PTHR21148:SF40	SUPFAM:SSF52833	SignalP:SignalP-noTM	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_domain	UniParc:UPI0001BE1DC9	ArrayExpress:VIT_14s0036g00970	EnsemblPlantsGene:VIT_14s0036g00970	EnsemblPlants:VIT_14s0036g00970.t01	SEG:seg

Description

No Description!

Coordinates

chr14:-:11434336..11439282

Molecular Weight (calculated)

27557.0 Da

IEP (calculated)

6.267

GRAVY (calculated)

-0.492

Length

244 amino acids

Sequence
(BLAST)

001: MILLIIVASL VIEKMDPDSV KSTLSNLAFG NVMAAAARDY QKEVLSQQKA QASNSINQEV DLDELMDDPE LERLHADRIA SLKKEAEKRQ ALKKQGHGEY
101: REVTEADFLG EVTGSEKVIC HFYHREFYRC KIMDKHLKSL APRHMDTKII KLDAENAPFF VAKLGVKTLP CVILFRKGIA VDRLIGFQDM GGKDDFATRT
201: LEALLIKKGI VSEKKKDEDD EDRGYPESRR NTVRSSVDPN SDSD

Best Arabidopsis Sequence Match ( AT5G66410.1 )
(BLAST)

001: MDPDTVKSTL SNLAFGNVLA AAARDYKKEV LANEKAQGSR PVNEEVDLDE LMDDPELEKL HADRIAALRR EVEKREAFKR QGHGEYREVS EGDFLGEVTR
101: SEKVICHFYH KEFYRCKIMD KHLKTLAPRH VDTKFIKMDA ENAPFFVTKL AIKTLPCVIL FSKGIAMDRL VGFQDLGAKD DFSTTKLENL LVKKGMLSEK
201: RKEEDEEDYE YQESIRRSVR SSANVDSDSD

Arabidopsis Description

PLP3BPLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.