Factsheet for PGSC0003DMT400039263

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g111380.2.1	Tomato	cytosol	99.79	99.79
VIT_15s0046g01350.t01	Wine grape	cytosol	94.51	94.51
AT3G61650.1	Thale cress	cytosol	93.46	93.46
AT5G05620.1	Thale cress	cytosol	93.04	93.04
CDY11370	Canola	cytosol	92.19	92.39
CDX71723	Canola	cytosol	92.19	92.39
Bra007622.1-P	Field mustard	cytosol	92.19	92.39
KRG97131	Soybean	cytosol	90.93	90.93
KRH68880	Soybean	endoplasmic reticulum	90.93	90.93
Os05t0156600-01	Rice	cytosol	89.66	90.62
EES19069	Sorghum	cytosol	89.24	90.19
HORVU1Hr1G023030.2	Barley	cytosol	87.97	88.91
TraesCS1D01G107300.1	Wheat	cytosol	87.97	88.91
TraesCS1B01G124800.1	Wheat	cytosol	87.97	88.91
TraesCS1A01G099400.1	Wheat	cytosol	87.97	88.91
GSMUA_Achr1P14750_001	Banana	cytosol	89.03	88.28
Zm00001d035567_P001	Maize	nucleus	44.3	84.0
Zm00001d013636_P001	Maize	nucleus, plastid	40.51	73.28
PGSC0003DMT400012732	Potato	cytosol	19.2	36.26
PGSC0003DMT400028800	Potato	cytosol	33.54	35.57
PGSC0003DMT400078206	Potato	cytosol	33.33	35.43
PGSC0003DMT400049212	Potato	cytosol	33.12	35.04
PGSC0003DMT400025739	Potato	cytosol	33.33	35.03
PGSC0003DMT400037093	Potato	cytosol	32.91	34.9
PGSC0003DMT400072466	Potato	cytosol	32.91	34.9
PGSC0003DMT400053750	Potato	cytosol	32.49	34.61
PGSC0003DMT400076938	Potato	cytosol	32.07	34.0
PGSC0003DMT400075425	Potato	cytosol	32.28	33.92
PGSC0003DMT400085117	Potato	cytosol	19.62	32.4
PGSC0003DMT400014466	Potato	cytosol	18.57	31.32
PGSC0003DMT400078710	Potato	cytosol	29.11	30.6
PGSC0003DMT400010906	Potato	cytosol	28.9	30.51
PGSC0003DMT400003336	Potato	cytosol	28.9	30.44
PGSC0003DMT400030110	Potato	cytosol	28.69	30.16
PGSC0003DMT400022574	Potato	cytosol	28.48	30.0
PGSC0003DMT400046148	Potato	cytosol	23.84	26.1
PGSC0003DMT400077781	Potato	cytosol	21.52	24.82

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:102582533	MapMan:20.1.2.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ncoils:Coil
GO:GO:0000166	GO:GO:0000930	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007017	GO:GO:0007020	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0031122	InterPro:Gamma_tubulin	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
UniProt:M1B807	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400015180	PGSC:PGSC0003DMG400015180	EnsemblPlants:PGSC0003DMT400039263
PRINTS:PR01161	PRINTS:PR01164	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF7	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000295734B
RefSeq:XP_006351465.1	:	:	:	:	:

Description

Gamma tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400015180]

Coordinates

chr3:-:50971358..50979247

Molecular Weight (calculated)

53365.4 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.371

Length

474 amino acids

Sequence
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKEGILEDF ATQGGDRKDV FFYQADDQHY IPRALLMDLE PRVINGIQNG EYRNLYNHEN VFIADHGGGA
101: GNNWASGYHQ GKQYEEDLMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQNETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL NRIAVERLHI TTPTFTQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR TKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSRKSPYVQ TAHRVSGLML ASHTGIRHLF SKCLTQYDKL
401: RKRQAFLDNY RNHPTFADND LSEFDESRDV IESLVDEYKA CESPDYIKWG MEDPDHALTG EGNASGTIDP KLSL

Best Arabidopsis Sequence Match ( AT3G61650.1 )
(BLAST)

001: MPREIITLQV GQCGNQIGME FWKQLCLEHG ISKDGILEDF ATQGGDRKDV FFYQADDQHY IPRALLIDLE PRVINGIQNG DYRNLYNHEN IFVADHGGGA
101: GNNWASGYHQ GKGVEEEIMD MIDREADGSD SLEGFVLCHS IAGGTGSGMG SYLLETLNDR YSKKLVQTYS VFPNQMETSD VVVQPYNSLL TLKRLTLNAD
201: CVVVLDNTAL GRIAVERLHL TNPTFAQTNS LVSTVMSAST TTLRYPGYMN NDLVGLLASL IPTPRCHFLM TGYTPLTVER QANVIRKTTV LDVMRRLLQT
301: KNIMVSSYAR NKEASQAKYI SILNIIQGEV DPTQVHESLQ RIRERKLVNF IEWGPASIQV ALSKKSPYVQ TAHRVSGLML ASHTSIRHLF SKCLSQYDKL
401: RKKQAFLDNY RKFPMFADND LSEFDESRDI IESLVDEYKA CESPDYIKWG MEDPEQLMTG EGNASGVVDP KLAF

Arabidopsis Description

TUBG1Tubulin gamma-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P38557]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.