Factsheet for PGSC0003DMT400075425

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040052

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20010.1	PGSC0003DMT400040052	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g089310.1.1	Tomato	nucleus	98.67	98.67
PGSC0003DMT400025739	Potato	cytosol	92.68	92.68
Bra015815.1-P	Field mustard	cytosol	91.8	92.62
CDX73198	Canola	cytosol	91.8	92.62
CDX87664	Canola	cytosol	91.8	92.62
KRH61035	Soybean	nucleus	92.02	92.43
VIT_18s0001g14360.t01	Wine grape	cytosol	91.8	92.41
PGSC0003DMT400076938	Potato	cytosol	91.57	92.39
KRH51701	Soybean	nucleus	91.57	92.19
PGSC0003DMT400014466	Potato	cytosol	57.43	92.17
AT1G75780.1	Thale cress	cytosol	91.35	92.17
KRH05958	Soybean	nucleus	91.57	91.98
PGSC0003DMT400072466	Potato	cytosol	91.13	91.95
PGSC0003DMT400078206	Potato	cytosol	90.91	91.93
PGSC0003DMT400049212	Potato	cytosol	91.13	91.74
PGSC0003DMT400028800	Potato	cytosol	90.91	91.72
PGSC0003DMT400037093	Potato	cytosol	90.91	91.72
PGSC0003DMT400053750	Potato	cytosol	90.02	91.24
KRH17435	Soybean	nucleus	92.24	91.03
AT1G20010.1	Thale cress	cytosol	90.47	90.87
PGSC0003DMT400012732	Potato	cytosol	24.83	44.62
PGSC0003DMT400022574	Potato	cytosol	43.02	43.11
PGSC0003DMT400085117	Potato	cytosol	27.27	42.86
PGSC0003DMT400030110	Potato	cytosol	42.79	42.79
PGSC0003DMT400010906	Potato	cytosol	42.57	42.76
PGSC0003DMT400003336	Potato	cytosol	42.35	42.44
PGSC0003DMT400078710	Potato	cytosol	41.69	41.69
PGSC0003DMT400039263	Potato	cytosol	33.92	32.28
PGSC0003DMT400077781	Potato	cytosol	29.05	31.87
PGSC0003DMT400046148	Potato	cytosol	30.6	31.87

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:102588315	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	InterPro:Beta-tubulin_BS
InterPro:Beta_tubulin	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525
InterPro:IPR037103	UniProt:M1CV59	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400029337	PGSC:PGSC0003DMG400029337
EnsemblPlants:PGSC0003DMT400075425	PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588
PANTHER:PTHR11588:SF116	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS
InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000294B9A5	RefSeq:XP_006342568.1	SEG:seg	:	:

Description

Beta-tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400029337]

Coordinates

chr12:-:57101684..57104403

Molecular Weight (calculated)

50459.6 Da

IEP (calculated)

4.533

GRAVY (calculated)

-0.346

Length

451 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGI DPTGRYNAGN AGASDLQLER INVYFNEATA GRFVPRAVLM DLEPGTMDSI RSGPSGQIFR PDNFVFGQSG
101: AGNNWAKGHY TEGAELIDSV LDVVRKEAEY CDCMQGFQVC HSLGGGTGSG MGTLLISKIR EEYPDRMMLT FSVFPSPKVS DTVVEPYNAT LSVHQLVENA
201: DECMVLDNEA LYDICFRTLK LTNPTFGDLN HLISATMSGA TCCLRFPGQL NSDLRKLAVN LIPFPRLHFF MVGFAPLTSR GSQQYSSLTV PELTQQMWDA
301: KNMMCAADPR HGRYLTASAM FRGKMSTKEV DEQMINVQNK NSSYFVEWIP NNVKSSVCDI PPTGLKMAST FIGNSTSIQE MFRRVSEQFT AMYRRKAFLH
401: WYTGEGMDEM EFTEAESNMN DLVAEYQQYQ DATAEVEEDF DDGVDEHYEG Q

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.