Factsheet for PGSC0003DMT400025739

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040052

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20010.1	PGSC0003DMT400040052	AT3G50960.1	18390592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g081490.2.1	Tomato	nucleus	98.67	98.67
VIT_18s0001g14360.t01	Wine grape	cytosol	94.9	95.54
AT1G75780.1	Thale cress	cytosol	94.68	95.53
CDX87664	Canola	cytosol	94.68	95.53
CDX73198	Canola	cytosol	94.68	95.53
Bra015815.1-P	Field mustard	cytosol	94.68	95.53
PGSC0003DMT400014466	Potato	cytosol	58.31	93.59
AT1G20010.1	Thale cress	cytosol	93.13	93.54
KRH05958	Soybean	nucleus	92.9	93.32
PGSC0003DMT400072466	Potato	cytosol	92.46	93.29
PGSC0003DMT400078206	Potato	cytosol	92.24	93.27
KRH51701	Soybean	nucleus	92.24	92.86
PGSC0003DMT400075425	Potato	cytosol	92.68	92.68
PGSC0003DMT400049212	Potato	cytosol	92.02	92.63
PGSC0003DMT400028800	Potato	cytosol	91.8	92.62
KRH61035	Soybean	nucleus	92.02	92.43
PGSC0003DMT400053750	Potato	cytosol	91.13	92.36
PGSC0003DMT400076938	Potato	cytosol	91.35	92.17
KRH17435	Soybean	nucleus	93.35	92.12
PGSC0003DMT400037093	Potato	cytosol	91.13	91.95
PGSC0003DMT400012732	Potato	cytosol	24.83	44.62
PGSC0003DMT400022574	Potato	cytosol	42.13	42.22
PGSC0003DMT400030110	Potato	cytosol	41.91	41.91
PGSC0003DMT400010906	Potato	cytosol	41.69	41.87
PGSC0003DMT400003336	Potato	cytosol	41.46	41.56
PGSC0003DMT400085117	Potato	cytosol	26.39	41.46
PGSC0003DMT400078710	Potato	cytosol	41.24	41.24
PGSC0003DMT400039263	Potato	cytosol	35.03	33.33
PGSC0003DMT400046148	Potato	cytosol	29.93	31.18
PGSC0003DMT400077781	Potato	cytosol	28.38	31.14

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:102577624	MapMan:20.1.1.2	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:ABB16968
ProteinID:ABB16968.1	ProteinID:ACH68564	ProteinID:ACH68564.1	UniProt:B5M4B1	InterPro:Beta-tubulin_BS	InterPro:Beta_tubulin
ProteinID:CAA83847	ProteinID:CAA83847.1	ProteinID:CAA83853	ProteinID:CAA83853.1	ncoils:Coil	EMBL:DQ228319
EMBL:EU935742	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
RefSeq:NP_001275378.1	PFAM:PF00091	PFAM:PF03953	EnsemblPlantsGene:PGSC0003DMG400009938	PGSC:PGSC0003DMG400009938	EnsemblPlants:PGSC0003DMT400025739
PRINTS:PR01161	PRINTS:PR01163	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF116
SMART:SM00864	SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI00017FB49C	EMBL:Z33382	EMBL:Z33402	SEG:seg	:	:

Description

Beta-tubulin [Source:PGSC_GENE;Acc:PGSC0003DMG400009938]

Coordinates

chr4:-:70848642..70851208

Molecular Weight (calculated)

50574.6 Da

IEP (calculated)

4.482

GRAVY (calculated)

-0.367

Length

451 amino acids

Sequence
(BLAST)

001: MREILHIQGG QCGNQIGSKF WEVICDEHGV DPTGRYKGTA AESDLQLERI NVYFNEASGG RYVPRAVLMD LEPGTMDSIR SGPYGQIFRP DNFVFGQSGA
101: GNNWAKGHYT EGAELIDAVL DVVRKEAENC DCLQGFQVCH SLGGGTGSGM GTLLISKVRE EYPDRMMLTF SVFPSPKVSD TVVEPYNATL SVHQLVENAD
201: ECMVLDNEAL YDICFRTLKL TTPSFGDLNH LISATMSGVT CCLRFPGQLN SDLRKLAVNL IPFPRLHFFM VGFAPLTSRG SQQYISLTVP ELTQQMWDAK
301: NMMCAADPRH GRYLTASAMF RGKMSTKEVD EQMINVQNKN SSYFVEWIPN NVKSSVCDIP PTGLKMASTF VGNSTSIQEM FRRVSEQFTA MFRRKAFLHW
401: YTGEGMDEME FTEAESNMND LVAEYQQYQD ATADDEEEYD DEAADDHQYE S

Best Arabidopsis Sequence Match ( AT1G75780.1 )
(BLAST)

001: MREILHVQGG QCGNQIGSKF WEVICDEHGV DPTGRYNGDS ADLQLERINV YYNEASGGRY VPRAVLMDLE PGTMDSIRSG PYGQIFRPDN FVFGQSGAGN
101: NWAKGHYTEG AELIDAVLDV VRKEAENCDC LQGFQVCHSL GGGTGSGMGT LLISKIREEY PDRMMLTFSV FPSPKVSDTV VEPYNATLSV HQLVENADEC
201: MVLDNEALYD ICFRTLKLST PSFGDLNHLI SATMSGVTCS LRFPGQLNSD LRKLAVNLIP FPRLHFFMVG FAPLTSRGSQ QYISLTVPEL TQQMWDAKNM
301: MCAADPRHGR YLTASAMFRG KMSTKEVDEQ ILNVQNKNSS YFVEWIPNNV KSSVCDIPPT GIKMASTFVG NSTSIQEMFR RVSEQFTAMF RRKAFLHWYT
401: GEGMDEMEFT EAESNMNDLV SEYQQYQDAT ADEEDEYDEE EEQVYES

Arabidopsis Description

TUBB1Tubulin beta-1 chain [Source:UniProtKB/Swiss-Prot;Acc:P12411]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.