CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29334	Canola	cytosol	95.4	96.29
CDY50974	Canola	cytosol	99.54	96.22
CDY45043	Canola	cytosol	99.54	96.22
CDY28123	Canola	cytosol	99.54	96.22
CDY03583	Canola	cytosol	99.54	96.22
CDY25017	Canola	cytosol	90.57	96.1
Bra039648.1-P	Field mustard	cytosol	99.31	96.0
KRH35640	Soybean	cytosol, nucleus	97.93	94.88
KRG91143	Soybean	nucleus	97.93	94.88
PGSC0003DMT400022574	Potato	cytosol	97.47	94.22
Solyc08g006890.2.1	Tomato	cytosol	97.47	94.01
Solyc04g077020.2.1	Tomato	cytosol, extracellular, nucleus, plastid	97.24	94.0
PGSC0003DMT400030110	Potato	cytosol	96.55	93.13
PGSC0003DMT400003336	Potato	cytosol	96.09	92.89
Solyc02g087880.2.1	Tomato	cytosol, unclear	96.09	92.89
CDY42294	Canola	cytosol	93.56	90.44
CDY42295	Canola	cytosol	93.56	90.44
CDX92501	Canola	cytosol	93.33	90.22
CDX92502	Canola	cytosol	93.33	90.22
CDX88875	Canola	cytosol	93.33	90.22
CDX70890	Canola	cytosol	93.33	90.22
CDY44941	Canola	cytosol	93.1	90.0
CDY44942	Canola	cytosol	93.1	90.0
CDY35856	Canola	cytosol	29.89	87.25
PGSC0003DMT400085117	Potato	cytosol	56.32	85.37
CDY46272	Canola	cytosol	45.98	69.2
CDY05559	Canola	mitochondrion	65.75	56.86
CDY67078	Canola	cytosol	38.62	42.64
CDY31638	Canola	cytosol	42.99	42.12
CDX84283	Canola	cytosol	42.99	41.93
CDY60599	Canola	cytosol	42.76	41.8
CDX96965	Canola	cytosol	42.76	41.8
CDY14924	Canola	cytosol	42.76	41.7
CDX97877	Canola	cytosol	42.99	41.65
CDY51360	Canola	cytosol	42.99	41.65
CDY13108	Canola	cytosol	42.53	41.57
CDX82788	Canola	cytosol	42.53	41.48
CDY31428	Canola	cytosol	42.53	41.48
CDX76444	Canola	cytosol	42.53	41.48
CDX79013	Canola	cytosol	42.53	41.48
CDX94014	Canola	cytosol	42.53	41.48
CDY53366	Canola	cytosol	42.76	41.43
CDX80390	Canola	cytosol	42.76	41.43
CDY45452	Canola	cytosol	42.76	41.43
CDY69221	Canola	cytosol	42.3	41.35
CDX86102	Canola	plasma membrane	42.76	41.33
CDY38073	Canola	cytosol	42.76	41.33
CDY00319	Canola	cytosol	42.76	41.33
CDX84345	Canola	cytosol	42.76	41.33
CDX98679	Canola	cytosol	42.3	41.26
CDX73198	Canola	cytosol	42.3	41.16
CDX87664	Canola	cytosol	42.3	41.16
CDY49002	Canola	cytosol	42.07	41.12
CDX69693	Canola	cytosol	42.76	40.35
CDX88051	Canola	cytosol	39.31	40.14
CDY21784	Canola	cytosol	39.31	40.05
CDX99087	Canola	cytosol	39.31	40.05
CDX97180	Canola	cytosol	42.76	38.67
CDX68422	Canola	cytosol	24.37	36.93
CDY11370	Canola	cytosol	31.26	28.75
CDX71723	Canola	cytosol	31.26	28.75

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	GO:A0A078JJJ6	UniProt:A0A078JJJ6
InterPro:Alpha_tubulin	EnsemblPlants:CDY66630	ProteinID:CDY66630	ProteinID:CDY66630.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00054670001	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953
PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00864
SMART:SM00865	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EDE283
SEG:seg	:	:	:	:	:

Description

BnaCnng51680DTubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A078JJJ6]

Coordinates

chrLK035367:+:860..3164

Molecular Weight (calculated)

48066.2 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.146

Length

435 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.