CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46272	Canola	cytosol	93.29	48.1
CDX70890	Canola	cytosol	100.0	33.11
CDX88875	Canola	cytosol	100.0	33.11
CDX92502	Canola	cytosol	99.33	32.89
CDX92501	Canola	cytosol	99.33	32.89
CDY42294	Canola	cytosol	99.33	32.89
CDY42295	Canola	cytosol	99.33	32.89
CDY44941	Canola	cytosol	98.66	32.67
CDY44942	Canola	cytosol	98.66	32.67
CDY29334	Canola	cytosol	93.29	32.25
VIT_06s0004g00480.t01	Wine grape	cytosol	96.64	32.07
KXG36544	Sorghum	cytosol	96.64	32.0
Os07t0574800-02	Rice	plasma membrane	96.64	32.0
TraesCS2A01G185500.2	Wheat	cytosol	96.64	32.0
TraesCS2B01G221800.1	Wheat	cytosol	96.64	32.0
TraesCS2D01G202200.1	Wheat	cytosol	96.64	32.0
Zm00001d006651_P005	Maize	plasma membrane	96.64	32.0
Zm00001d021891_P001	Maize	cytosol	96.64	32.0
PGSC0003DMT400010906	Potato	cytosol	95.97	31.85
HORVU2Hr1G037570.3	Barley	cytosol	94.63	31.76
HORVU2Hr1G037550.2	Barley	cytosol	94.63	31.19
CDY28123	Canola	cytosol	93.29	30.89
CDY50974	Canola	cytosol	93.29	30.89
CDY45043	Canola	cytosol	93.29	30.89
CDY03583	Canola	cytosol	93.29	30.89
CDY66630	Canola	cytosol	87.25	29.89
GSMUA_Achr5P14830_001	Banana	cytosol	83.22	28.9
GSMUA_Achr7P01800_001	Banana	cytosol	75.84	27.9
CDY25017	Canola	cytosol	67.79	24.63
CDY05559	Canola	mitochondrion	63.09	18.69
CDX68422	Canola	cytosol	33.56	17.42
CDY21784	Canola	cytosol	35.57	12.41
CDX99087	Canola	cytosol	35.57	12.41
CDY13108	Canola	cytosol	36.24	12.13
CDX96965	Canola	cytosol	36.24	12.13
CDY14924	Canola	cytosol	36.24	12.11
CDX88051	Canola	cytosol	34.23	11.97
CDY69221	Canola	cytosol	35.57	11.91
CDY60599	Canola	cytosol	35.57	11.91
CDY49002	Canola	cytosol	35.57	11.91
CDX87664	Canola	cytosol	35.57	11.86
CDX73198	Canola	cytosol	35.57	11.86
CDY45452	Canola	cytosol	35.57	11.8
CDY53366	Canola	cytosol	35.57	11.8
CDY51360	Canola	cytosol	35.57	11.8
CDX97877	Canola	cytosol	35.57	11.8
CDX84345	Canola	cytosol	35.57	11.78
CDY00319	Canola	cytosol	35.57	11.78
CDY38073	Canola	cytosol	35.57	11.78
CDX86102	Canola	plasma membrane	35.57	11.78
CDY31638	Canola	cytosol	34.9	11.71
CDY67078	Canola	cytosol	30.87	11.68
CDX69693	Canola	cytosol	35.57	11.5
CDY31428	Canola	cytosol	34.23	11.44
CDX94014	Canola	cytosol	34.23	11.44
CDX82788	Canola	cytosol	34.23	11.44
CDX79013	Canola	cytosol	34.23	11.44
CDX76444	Canola	cytosol	34.23	11.44
CDX84283	Canola	cytosol	34.23	11.44
CDX80390	Canola	cytosol	34.23	11.36
CDX98679	Canola	cytosol	33.56	11.21
CDX97180	Canola	cytosol	35.57	11.02
CDY11370	Canola	cytosol	22.15	6.98
CDX71723	Canola	cytosol	22.15	6.98

Protein Annotations

Gene3D:1.10.287.600	Gene3D:3.30.1330.20	MapMan:35.1	GO:A0A078HDM3	UniProt:A0A078HDM3	InterPro:Alpha_tubulin
EnsemblPlants:CDY35856	ProteinID:CDY35856	ProteinID:CDY35856.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00059390001	InterPro:IPR023123	InterPro:IPR037103	PFAM:PF03953
PRINTS:PR01162	PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	SMART:SM00865	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C
InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin_C	UniParc:UPI0004EEDB0C	SEG:seg

Description

BnaC09g37880DBnaC09g37880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDM3]

Coordinates

chrLK032362:-:343931..344688

Molecular Weight (calculated)

16632.6 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.449

Length

149 amino acids

Sequence
(BLAST)

001: MAKCDPRHGK YMACCLMYRG DVVPKDVNAA VGTIKTKRTV QFVDWCPTGF KCGINYQPPT VVPGGDLAKV QRAVCMISNN TAVAEVFSRI DHKFDLMYAK
101: RAFVHWYVGE GMEEGEFSEA REDLAALEKD YEEVGAEGGD DEEDEGEDY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.