CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021891_P001	Maize	cytosol	100.0	100.0
Zm00001d006651_P005	Maize	plasma membrane	99.56	99.56
TraesCS2D01G202200.1	Wheat	cytosol	98.89	98.89
TraesCS2B01G221800.1	Wheat	cytosol	98.89	98.89
TraesCS2A01G185500.2	Wheat	cytosol	98.89	98.89
Os07t0574800-02	Rice	plasma membrane	98.89	98.89
GSMUA_Achr5P14830_001	Banana	cytosol	93.11	97.67
VIT_06s0004g00480.t01	Wine grape	cytosol	96.67	96.88
GSMUA_Achr7P01800_001	Banana	cytosol	87.11	96.79
CDY35856	Canola	cytosol	32.0	96.64
PGSC0003DMT400010906	Potato	cytosol	96.22	96.44
KXG37669	Sorghum	cytosol	92.0	91.8
KXG37668	Sorghum	cytosol	92.0	91.8
EER92631	Sorghum	cytosol	91.33	91.74
HORVU2Hr1G037550.2	Barley	cytosol	91.33	90.93
HORVU2Hr1G037570.3	Barley	cytosol	86.67	87.84
EER93374	Sorghum	cytosol	87.33	87.33
OQU78051	Sorghum	cytosol	61.33	68.32
KXG32297	Sorghum	cytosol	42.22	42.6
EES01623	Sorghum	cytosol	42.0	42.28
EES04582	Sorghum	cytosol	41.78	42.15
EER90205	Sorghum	cytosol	41.78	42.15
EER93354	Sorghum	cytosol	41.56	42.02
EER95686	Sorghum	cytosol	41.11	41.48
EER93713	Sorghum	cytosol	40.67	41.12
OQU78011	Sorghum	cytosol	34.89	36.77
EES19069	Sorghum	cytosol	30.44	29.21

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A1B6QF50	InterPro:Alpha_tubulin
InterPro:Beta-tubulin_BS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EnsemblPlants:KXG36544	ProteinID:KXG36544	ProteinID:KXG36544.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	ScanProsite:PS00228	PANTHER:PTHR11588	PANTHER:PTHR11588:SF48	SMART:SM00864
SMART:SM00865	EnsemblPlantsGene:SORBI_3002G350400	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin
InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase
UniParc:UPI000013698D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:71460150..71463561

Molecular Weight (calculated)

49601.7 Da

IEP (calculated)

4.681

GRAVY (calculated)

-0.161

Length

450 amino acids

Sequence
(BLAST)

001: MREIISIHIG QAGIQVGNAC WELYCLEHGI EPDGTMPSDT SVGVAHDAFN TFFSETGSGK HVPRAIFVDL EPTVIDEVRT GSYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVPE ITNAVFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT VQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGA DDEGDEGDDY

Best Arabidopsis Sequence Match ( AT5G19770.1 )
(BLAST)

001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY

Arabidopsis Description

TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.