CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37669	Sorghum	cytosol	99.56	99.56
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	99.56	99.56
TraesCS4D01G057000.1	Wheat	cytosol	99.56	99.56
TraesCS4B01G056700.1	Wheat	cytosol	99.56	99.56
TraesCS4A01G257800.1	Wheat	cytosol	99.56	99.56
Zm00001d033850_P003	Maize	cytosol	98.89	98.89
TraesCS1A01G350200.1	Wheat	golgi	98.45	98.45
TraesCS1D01G353100.5	Wheat	cytosol	98.45	98.45
TraesCS1B01G364500.3	Wheat	cytosol	98.45	98.45
HORVU1Hr1G081280.1	Barley	cytosol	98.23	98.23
VIT_00s1322g00010.t01	Wine grape	cytosol	59.87	98.18
Os11t0247300-01	Rice	plasma membrane	98.0	98.0
GSMUA_Achr7P17960_001	Banana	cytosol	85.14	96.73
Solyc12g088180.1.1	Tomato	cytosol	47.01	93.39
EER93374	Sorghum	cytosol	92.24	92.44
KXG36544	Sorghum	cytosol	91.8	92.0
EER92631	Sorghum	cytosol	88.03	88.62
OQU78051	Sorghum	cytosol	64.75	72.28
CDY46272	Canola	cytosol	45.23	70.59
Bra020572.1-P	Field mustard	cytosol	63.64	61.32
CDY05559	Canola	mitochondrion	63.64	57.06
EES04582	Sorghum	cytosol	42.79	43.27
EES01623	Sorghum	cytosol	42.79	43.18
EER93354	Sorghum	cytosol	42.35	42.92
KXG32297	Sorghum	cytosol	42.35	42.83
EER95686	Sorghum	cytosol	42.35	42.83
EER90205	Sorghum	cytosol	42.35	42.83
EER93713	Sorghum	cytosol	40.58	41.12
OQU78011	Sorghum	cytosol	35.7	37.7
EES19069	Sorghum	cytosol	30.82	29.64

Protein Annotations

Gene3D:1.10.287.600	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	UniProt:A0A1B6QIB9	InterPro:Alpha_tubulin
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005198
GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0007010	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103
EnsemblPlants:KXG37668	ProteinID:KXG37668	ProteinID:KXG37668.1	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865
EnsemblPlantsGene:SORBI_3001G107100	SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom
InterPro:Tubulin/FtsZ_C_sf	InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0001C80CEC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:8265620..8268721

Molecular Weight (calculated)

49721.7 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.201

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QADGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEYD EGEDGDEGDE Y

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.