CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020572.1-P	Field mustard	cytosol	93.04	100.0
VIT_00s1322g00010.t01	Wine grape	cytosol	42.35	77.45
CDY25017	Canola	cytosol	59.84	73.41
Solyc12g088180.1.1	Tomato	cytosol	32.41	71.81
CDY50974	Canola	cytosol	59.84	66.89
CDY28123	Canola	cytosol	59.84	66.89
CDY03583	Canola	cytosol	59.64	66.67
CDY45043	Canola	cytosol	59.64	66.67
CDY66630	Canola	cytosol	56.86	65.75
CDY29334	Canola	cytosol	56.06	65.43
GSMUA_Achr7P17960_001	Banana	cytosol	51.29	64.99
HORVU1Hr1G081280.1	Barley	cytosol	57.65	64.3
TraesCS1B01G364500.3	Wheat	cytosol	57.46	64.08
TraesCS1A01G350200.1	Wheat	golgi	57.46	64.08
Os11t0247300-01	Rice	plasma membrane	57.46	64.08
TraesCS1D01G353100.5	Wheat	cytosol	57.46	64.08
KXG37669	Sorghum	cytosol	57.26	63.86
Zm00001d033850_P003	Maize	cytosol	57.26	63.86
TraesCS4A01G257800.1	Wheat	cytosol	57.26	63.86
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	57.26	63.86
TraesCS4B01G056700.1	Wheat	cytosol	57.26	63.86
TraesCS4D01G057000.1	Wheat	cytosol	57.26	63.86
KXG37668	Sorghum	cytosol	57.06	63.64
Zm00001d013367_P001	Maize	plastid	57.06	63.64
CDY35856	Canola	cytosol	18.69	63.09
CDY42295	Canola	cytosol	55.67	62.22
CDY42294	Canola	cytosol	55.67	62.22
CDX92502	Canola	cytosol	55.47	62.0
CDX92501	Canola	cytosol	55.47	62.0
CDX88875	Canola	cytosol	55.47	62.0
CDX70890	Canola	cytosol	55.47	62.0
CDY44942	Canola	cytosol	55.27	61.78
CDY44941	Canola	cytosol	55.27	61.78
CDY46272	Canola	cytosol	32.6	56.75
CDX68422	Canola	cytosol	18.89	33.1
CDX73198	Canola	cytosol	26.84	30.2
CDX87664	Canola	cytosol	26.84	30.2
CDY60599	Canola	cytosol	26.64	30.11
CDX79013	Canola	cytosol	26.64	30.04
CDX82788	Canola	cytosol	26.64	30.04
CDY31638	Canola	cytosol	26.44	29.95
CDX96965	Canola	cytosol	26.44	29.89
CDY31428	Canola	cytosol	26.44	29.82
CDY14924	Canola	cytosol	26.44	29.82
CDX76444	Canola	cytosol	26.44	29.82
CDY38073	Canola	cytosol	26.64	29.78
CDY00319	Canola	cytosol	26.64	29.78
CDX84345	Canola	cytosol	26.64	29.78
CDX86102	Canola	plasma membrane	26.64	29.78
CDY69221	Canola	cytosol	26.24	29.66
CDY13108	Canola	cytosol	26.24	29.66
CDY45452	Canola	cytosol	26.44	29.62
CDX84283	Canola	cytosol	26.24	29.6
CDY49002	Canola	cytosol	26.04	29.44
CDY53366	Canola	cytosol	26.24	29.4
CDX98679	Canola	cytosol	26.04	29.37
CDX94014	Canola	cytosol	26.04	29.37
CDY51360	Canola	cytosol	26.04	29.18
CDX97877	Canola	cytosol	26.04	29.18
CDX80390	Canola	cytosol	25.84	28.95
CDX69693	Canola	cytosol	26.44	28.85
CDY67078	Canola	cytosol	21.87	27.92
CDX99087	Canola	cytosol	23.66	27.87
CDY21784	Canola	cytosol	23.66	27.87
CDX97180	Canola	cytosol	26.44	27.65
CDX88051	Canola	cytosol	22.86	27.0
CDY11370	Canola	cytosol	20.08	21.35
CDX71723	Canola	cytosol	20.08	21.35

Protein Annotations

MapMan:17.1.2.1.18	Gene3D:3.100.10.10	Gene3D:3.40.50.1440	GO:A0A078EYC6	InterPro:Alpha_tubulin	EnsemblPlants:CDY05559
ProteinID:CDY05559	ProteinID:CDY05559.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00120504001	InterPro:IPR036525	InterPro:L18e/L15P_sf
PFAM:PF00091	PFAM:PF03953	PFAM:PF17135	PRINTS:PR01161	PRINTS:PR01162	ScanProsite:PS00227
PANTHER:PTHR11588	PANTHER:PTHR11588:SF254	InterPro:Ribosomal_L18e/L15P	SMART:SM00864	SMART:SM00865	SUPFAM:SSF52080
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_GTPase_sf
InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI0004EF4AD7	SEG:seg	:	:

Description

BnaA02g31320D

Coordinates

chrLK031962:-:881521..884192

Molecular Weight (calculated)

55884.4 Da

IEP (calculated)

9.478

GRAVY (calculated)

-0.256

Length

503 amino acids

Sequence
(BLAST)

001: MTSRNLKRER ACSYKFINPN FISVSLRCRH STAHAMGIDL IAGGKSKKTK RTAPKSDDVY LKLLVKLYRF LVRRTGSKFD AVILKRLFMS KVNKAPLSLS
101: KLVEFMKGKD GKIAVLVGTI TDDLRVHEIP AMKVTALRFT ERARARIEKA GGECLTFDQL ALVAPLGQNT VLLRGPKNSR EAVKHFGPAP GVPHSHSKPY
201: VRAKGRKFEK ARGKRKSRGF KLADNCTGLQ GFLVFNAVGG GTGSGLGSLL LERLSVDYGK KSKLGFTVYP SPQVSTSVVE PYNSVLSTHS LLEHTDVSIL
301: LDNEAIYDIC RRSLNIERPT YTNLNRLVSQ VISSLTASLR FDGALNVDVT EFQTNLVPYP RIHFMLSSYA PVISAEKAFH EQLSVAEITN SAFEPASMMA
401: KCDPRHGKYM ACCLMYRCDV VPKDVNAAVG TIKTKRTIQF VDWCSSAFDL MYAKRAFVHW YVGEGMEEGE FSEAREDLAA LEKDYEEVGA EGGDDEDDEG
501: EEY

Best Arabidopsis Sequence Match ( AT1G04820.1 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPSDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLSIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA4Tubulin alpha-2 chain [Source:UniProtKB/Swiss-Prot;Acc:B9DGT7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.