Factsheet for Zm00001d013367_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G009520.1	Barley	cytosol, plasma membrane	99.56	99.56
KXG37669	Sorghum	cytosol	99.56	99.56
TraesCS4A01G257800.1	Wheat	cytosol	99.56	99.56
TraesCS4B01G056700.1	Wheat	cytosol	99.56	99.56
TraesCS4D01G057000.1	Wheat	cytosol	99.56	99.56
Zm00001d033850_P003	Maize	cytosol	99.33	99.33
TraesCS1A01G350200.1	Wheat	golgi	98.45	98.45
TraesCS1B01G364500.3	Wheat	cytosol	98.45	98.45
TraesCS1D01G353100.5	Wheat	cytosol	98.45	98.45
HORVU1Hr1G081280.1	Barley	cytosol	98.23	98.23
VIT_00s1322g00010.t01	Wine grape	cytosol	59.87	98.18
Os11t0247300-01	Rice	plasma membrane	98.0	98.0
GSMUA_Achr7P17960_001	Banana	cytosol	84.92	96.47
Solyc12g088180.1.1	Tomato	cytosol	47.01	93.39
Zm00001d013159_P001	Maize	cytosol	92.68	92.89
Zm00001d006651_P005	Maize	plasma membrane	91.57	91.78
Zm00001d021891_P001	Maize	cytosol	91.57	91.78
Zm00001d048065_P002	Maize	cytosol, mitochondrion	87.36	87.95
CDY46272	Canola	cytosol	45.23	70.59
Bra020572.1-P	Field mustard	cytosol	63.64	61.32
CDY05559	Canola	mitochondrion	63.64	57.06
Zm00001d040509_P001	Maize	cytosol	24.17	49.1
Zm00001d036626_P001	Maize	cytosol	23.73	47.14
Zm00001d046996_P001	Maize	cytosol	23.95	46.75
Zm00001d034022_P001	Maize	cytosol	26.61	45.8
Zm00001d013139_P001	Maize	cytosol	29.71	45.73
Zm00001d008216_P002	Maize	cytosol	24.17	45.61
Zm00001d015348_P002	Maize	plastid	42.57	43.24
Zm00001d027295_P002	Maize	plasma membrane	42.35	42.83
Zm00001d012556_P001	Maize	plastid	41.91	42.19
Zm00001d033457_P001	Maize	plasma membrane	40.35	40.9
Zm00001d010275_P001	Maize	cytosol	26.83	40.6
Zm00001d013612_P002	Maize	plasma membrane	40.13	40.49
Zm00001d043158_P001	Maize	plasma membrane	42.35	38.51
Zm00001d037582_P001	Maize	cytosol, extracellular	30.6	29.42
Zm00001d009780_P003	Maize	cytosol	31.04	27.67
Zm00001d013636_P001	Maize	nucleus, plastid	13.97	24.05
Zm00001d035567_P001	Maize	nucleus	13.3	24.0
Zm00001d026623_P001	Maize	cytosol, plastid	21.06	22.89

Protein Annotations

Gene3D:1.10.287.600	EntrezGene:100381303	MapMan:20.1.1.1	Gene3D:3.30.1330.20	Gene3D:3.40.50.1440	ProteinID:AQK63221.1
InterPro:Alpha_tubulin	UniProt:B6SPX4	ncoils:Coil	EMBL:EU954789	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005198	GO:GO:0005200	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0007010	GO:GO:0007017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
InterPro:IPR023123	InterPro:IPR036525	InterPro:IPR037103	PFAM:PF00091	PFAM:PF03953	PRINTS:PR01161
PRINTS:PR01162	ScanProsite:PS00227	PANTHER:PTHR11588	PANTHER:PTHR11588:SF242	SMART:SM00864	SMART:SM00865
SUPFAM:SSF52490	SUPFAM:SSF55307	InterPro:Tub_FtsZ_C	InterPro:Tubulin	InterPro:Tubulin/FtsZ_2-layer-sand-dom	InterPro:Tubulin/FtsZ_C_sf
InterPro:Tubulin/FtsZ_GTPase_sf	InterPro:Tubulin_C	InterPro:Tubulin_CS	InterPro:Tubulin_FtsZ_GTPase	UniParc:UPI000182B537	EnsemblPlantsGene:Zm00001d013367
EnsemblPlants:Zm00001d013367_P001	EnsemblPlants:Zm00001d013367_T001	SEG:seg	:	:	:

Description

alpha tubulin4Tubulin alpha-4 chain

Coordinates

chr5:-:9834794..9838085

Molecular Weight (calculated)

49719.8 Da

IEP (calculated)

4.646

GRAVY (calculated)

-0.191

Length

451 amino acids

Sequence
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QADGQMPGDK TIGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVNEFQTNLV PYPRIHFMLS SYAPVISAEK AYHEQLSVAE ITNSAFEPSS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVATIKTKRT IQFVDWCPTG FKCGINYQPP SVVPGGDLAK VQRAVCMISN STSVVEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEFD EGEDGDEGDE Y

Best Arabidopsis Sequence Match ( AT4G14960.2 )
(BLAST)

001: MRECISIHIG QAGIQVGNAC WELYCLEHGI QPDGQMPGDK TVGGGDDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTI GKEIVDLCLD RIRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT VYPSPQVSTS VVEPYNSVLS THSLLEHTDV
201: SILLDNEAIY DICRRSLNIE RPTYTNLNRL VSQVISSLTA SLRFDGALNV DVTEFQTNLV PYPRIHFMLS SYAPVISAEK AFHEQLSVAE ITNSAFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT IQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN STSVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEDDEGEEY

Arabidopsis Description

TUBA6Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UXP7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.