Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35856 | Canola | cytosol | 31.19 | 94.63 |
| TraesCS2D01G202200.1 | Wheat | cytosol | 91.81 | 92.22 |
| TraesCS2B01G221800.1 | Wheat | cytosol | 91.81 | 92.22 |
| TraesCS2A01G185500.2 | Wheat | cytosol | 91.81 | 92.22 |
| HORVU2Hr1G037560.2 | Barley | cytosol | 73.89 | 91.51 |
| Zm00001d021891_P001 | Maize | cytosol | 90.93 | 91.33 |
| Os07t0574800-02 | Rice | plasma membrane | 90.93 | 91.33 |
| KXG36544 | Sorghum | cytosol | 90.93 | 91.33 |
| Zm00001d006651_P005 | Maize | plasma membrane | 90.71 | 91.11 |
| VIT_06s0004g00480.t01 | Wine grape | cytosol | 90.49 | 91.09 |
| GSMUA_Achr5P14830_001 | Banana | cytosol | 85.84 | 90.44 |
| PGSC0003DMT400010906 | Potato | cytosol | 89.6 | 90.2 |
| GSMUA_Achr7P01800_001 | Banana | cytosol | 79.87 | 89.14 |
| HORVU4Hr1G009520.1 | Barley | cytosol, plasma membrane | 86.5 | 86.7 |
| HORVU1Hr1G081280.1 | Barley | cytosol | 86.06 | 86.25 |
| HORVU4Hr1G067370.1 | Barley | cytosol | 85.62 | 86.19 |
| HORVU2Hr1G037570.3 | Barley | cytosol | 83.19 | 84.68 |
| HORVU5Hr1G098960.2 | Barley | cytosol, mitochondrion | 85.84 | 77.91 |
| HORVU6Hr1G027620.1 | Barley | plasma membrane | 38.5 | 39.01 |
| HORVU1Hr1G068170.1 | Barley | cytosol | 38.5 | 38.93 |
| HORVU0Hr1G026030.2 | Barley | cytosol | 38.5 | 38.93 |
| HORVU7Hr1G107100.2 | Barley | cytosol, nucleus | 38.27 | 38.79 |
| HORVU3Hr1G078940.1 | Barley | mitochondrion | 38.05 | 34.19 |
| HORVU4Hr1G002530.2 | Barley | cytosol | 36.73 | 33.74 |
| HORVU5Hr1G100900.2 | Barley | cytosol | 37.61 | 33.6 |
| HORVU1Hr1G064870.3 | Barley | mitochondrion | 38.27 | 32.95 |
| HORVU4Hr1G087740.1 | Barley | cytosol | 31.64 | 30.49 |
| HORVU1Hr1G023030.2 | Barley | cytosol | 26.99 | 26.01 |
Protein Annotations
| Gene3D:1.10.287.600 | MapMan:20.1.1.1 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | UniProt:A0A287HQK5 | InterPro:Alpha_tubulin |
| ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 |
| GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007010 | GO:GO:0007017 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | EnsemblPlantsGene:HORVU2Hr1G037550 | EnsemblPlants:HORVU2Hr1G037550.2 | InterPro:IPR023123 |
| InterPro:IPR036525 | InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 | PRINTS:PR01161 | PRINTS:PR01162 |
| ScanProsite:PS00227 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF48 | SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 |
| SUPFAM:SSF55307 | InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf |
| InterPro:Tubulin_C | InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | UniParc:UPI000B46CAB0 | SEG:seg | : |
Description
Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A287HQK5]
Coordinates
chrchr2H:-:172678880..172681761
Molecular Weight (calculated)
50014.0 Da
IEP (calculated)
5.667
GRAVY (calculated)
-0.287
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: EGDHQHPHRP GRDPGRQRLL GALLPRARHQ SGWHHAQVHT DTTVGVAHDA FNTFFSETGA GKHVPRAIFV DLEPTVIDEV RTGAYRQLFH PEQLISGKED
101: AANNFARGHY TVGKEIVDLC LDRVRKLADN CTGLQGFLVF NAVGGGTGSG LGSLLLERLS VDYGKKSKLG FTIYPSPQVS TAVVEPYNSV LSTHSLLEHT
201: DVAVLLDNEA IYDICRRSLD IERPTYTNLN RLISQIISSL TTSLRFDGAI NVDVTEFQTN LVPYPRIHFM LSSYAPVISA EKAYHEQLSV PEITNAVFEP
301: SSMMAKCDPR HGKYMACCLM YRGDVVPKDV NAAVATIKTK RTVQFVDWCP TGFKCGINYQ PPSVVPGGDL AKVQRAVCMI SNNTAVAEVF SRIDHKFDLM
401: YAKRAFVHWY VGEGMEEGEF SEAREDLAAL EKDYEEVGAE GADDEGDEGD DY
101: AANNFARGHY TVGKEIVDLC LDRVRKLADN CTGLQGFLVF NAVGGGTGSG LGSLLLERLS VDYGKKSKLG FTIYPSPQVS TAVVEPYNSV LSTHSLLEHT
201: DVAVLLDNEA IYDICRRSLD IERPTYTNLN RLISQIISSL TTSLRFDGAI NVDVTEFQTN LVPYPRIHFM LSSYAPVISA EKAYHEQLSV PEITNAVFEP
301: SSMMAKCDPR HGKYMACCLM YRGDVVPKDV NAAVATIKTK RTVQFVDWCP TGFKCGINYQ PPSVVPGGDL AKVQRAVCMI SNNTAVAEVF SRIDHKFDLM
401: YAKRAFVHWY VGEGMEEGEF SEAREDLAAL EKDYEEVGAE GADDEGDEGD DY
001: MREIISIHIG QAGIQVGNSC WELYCLEHGI QPDGMMPSDT TVGVAHDAFN TFFSETGAGK HVPRAVFVDL EPTVIDEVRT GTYRQLFHPE QLISGKEDAA
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY
101: NNFARGHYTV GKEIVDLCLD RVRKLADNCT GLQGFLVFNA VGGGTGSGLG SLLLERLSVD YGKKSKLGFT IYPSPQVSTA VVEPYNSVLS THSLLEHTDV
201: AVLLDNEAIY DICRRSLDIE RPTYTNLNRL ISQIISSLTT SLRFDGAINV DITEFQTNLV PYPRIHFMLS SYAPVISAAK AYHEQLSVPE ITNAVFEPAS
301: MMAKCDPRHG KYMACCLMYR GDVVPKDVNA AVGTIKTKRT VQFVDWCPTG FKCGINYQPP TVVPGGDLAK VQRAVCMISN NTAVAEVFSR IDHKFDLMYA
401: KRAFVHWYVG EGMEEGEFSE AREDLAALEK DYEEVGAEGG DDEEDEGEDY
Arabidopsis Description
TUBA3Tubulin alpha chain [Source:UniProtKB/TrEMBL;Acc:A0A178UTQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.