Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr11P... | Banana | cytosol | 2.7 | 100.0 |
TraesCS4D01G015400.1 | Wheat | cytosol | 99.55 | 99.55 |
TraesCS4B01G017100.1 | Wheat | cytosol | 98.88 | 98.88 |
Os03t0661300-01 | Rice | plasma membrane | 94.83 | 94.62 |
Zm00001d033457_P001 | Maize | plasma membrane | 93.93 | 93.93 |
EER93713 | Sorghum | cytosol | 93.71 | 93.71 |
Zm00001d013612_P002 | Maize | plasma membrane | 93.26 | 92.84 |
TraesCS5A01G416400.1 | Wheat | cytosol | 91.91 | 92.12 |
TraesCS7A01G466600.1 | Wheat | golgi | 92.13 | 91.93 |
TraesCS5A01G534300.1 | Wheat | cytosol | 91.24 | 90.83 |
TraesCS3A01G333300.1 | Wheat | cytosol | 91.69 | 90.47 |
TraesCS1A01G258800.1 | Wheat | golgi | 90.34 | 90.34 |
TraesCS1A01G309700.1 | Wheat | golgi | 90.56 | 90.16 |
CDX68422 | Canola | cytosol | 57.98 | 89.9 |
VIT_02s0025g03540.t01 | Wine grape | cytosol | 89.44 | 89.64 |
HORVU4Hr1G002530.2 | Barley | cytosol | 99.1 | 89.63 |
KRH41169 | Soybean | cytosol | 89.44 | 89.44 |
KRH59870 | Soybean | endoplasmic reticulum | 89.44 | 89.24 |
TraesCS5A01G407800.1 | Wheat | golgi | 41.8 | 41.24 |
TraesCS4A01G257800.1 | Wheat | cytosol | 41.57 | 41.02 |
TraesCS1A01G350200.1 | Wheat | golgi | 41.35 | 40.8 |
TraesCS2A01G185500.2 | Wheat | cytosol | 40.45 | 40.0 |
TraesCS4A01G065700.1 | Wheat | cytosol | 39.78 | 39.42 |
TraesCS1A01G099400.1 | Wheat | cytosol | 35.73 | 33.9 |
Protein Annotations
Gene3D:1.10.287.600 | MapMan:20.1.1.2 | Gene3D:3.30.1330.20 | Gene3D:3.40.50.1440 | InterPro:Beta-tubulin_BS | InterPro:Beta_tubulin |
ncoils:Coil | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005198 |
GO:GO:0005200 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005856 | GO:GO:0005874 | GO:GO:0007017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
GO:GO:0016787 | InterPro:IPR023123 | InterPro:IPR036525 | InterPro:IPR037103 | PFAM:PF00091 | PFAM:PF03953 |
PRINTS:PR01161 | PRINTS:PR01163 | ScanProsite:PS00227 | ScanProsite:PS00228 | PANTHER:PTHR11588 | PANTHER:PTHR11588:SF246 |
SMART:SM00864 | SMART:SM00865 | SUPFAM:SSF52490 | SUPFAM:SSF55307 | EnsemblPlantsGene:TraesCS4A01G296600 | EnsemblPlants:TraesCS4A01G296600.1 |
InterPro:Tub_FtsZ_C | InterPro:Tubulin | InterPro:Tubulin/FtsZ_2-layer-sand-dom | InterPro:Tubulin/FtsZ_C_sf | InterPro:Tubulin/FtsZ_GTPase_sf | InterPro:Tubulin_C |
InterPro:Tubulin_CS | InterPro:Tubulin_FtsZ_GTPase | TIGR:cd02187 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:596624604..596628189
Molecular Weight (calculated)
49734.8 Da
IEP (calculated)
4.463
GRAVY (calculated)
-0.348
Length
445 amino acids
Sequence
(BLAST)
(BLAST)
001: MREILHIQGG QCGNQIGAKF WEVICGEHGV DPTGQYTGTA PEQLERMDVY FNEAGGNRYV PRAVLMDLEP GTMDSLRSGP IGAIFRPDNF VYGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIPPVG LAMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTS
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEEYDDEEEP AADQA
101: WAKGHYTEGA ELIDSVLDVV RKEAENSDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTNP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM MNVQNKNSSY FVEWIPNNVK SSVCDIPPVG LAMSSTFVGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTS
401: EGMDEMEFTE AESNMNDLVA EYQQYQDATA EEEYDDEEEP AADQA
001: MREILHIQGG QCGNQIGAKF WEVVCAEHGI DSTGRYQGEN DLQLERVNVY YNEASCGRFV PRAVLMDLEP GTMDSVRSGP YGQIFRPDNF VFGQSGAGNN
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ
101: WAKGHYTEGA ELIDSVLDVV RKEAENCDCL QGFQVCHSLG GGTGSGMGTL LISKIREEYP DRMMLTFSVF PSPKVSDTVV EPYNATLSVH QLVENADECM
201: VLDNEALYDI CFRTLKLTTP SFGDLNHLIS ATMSGVTCCL RFPGQLNSDL RKLAVNLIPF PRLHFFMVGF APLTSRGSQQ YRALTVPELT QQMWDAKNMM
301: CAADPRHGRY LTASAMFRGK MSTKEVDEQM INVQNKNSSY FVEWIPNNVK STVCDIPPTG LKMASTFIGN STSIQEMFRR VSEQFTAMFR RKAFLHWYTG
401: EGMDEMEFTE AESNMNDLVS EYQQYQDATA DEEEGYEYEE DEVEVQEEQ
Arabidopsis Description
TUBB8Tubulin beta chain [Source:UniProtKB/TrEMBL;Acc:A0A178UKM5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.