CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69045	Canola	cytosol	99.52	99.52
Bra011517.1-P	Field mustard	cytosol	99.05	99.05
AT2G18990.1	Thale cress	cytosol	89.52	89.1
AT3G25580.1	Thale cress	nucleus	87.14	87.14
CDX72474	Canola	cytosol	44.76	84.68
CDX72476	Canola	cytosol	42.38	80.91
VIT_03s0091g00380.t01	Wine grape	cytosol	74.29	73.58
KRH35706	Soybean	cytosol	74.29	73.24
Solyc11g012730.1.1	Tomato	cytosol	72.86	72.17
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	72.86	71.83
KRH13153	Soybean	cytosol	52.38	71.43
PGSC0003DMT400034610	Potato	cytosol	71.9	70.56
GSMUA_Achr9P21300_001	Banana	cytosol	70.48	70.14
TraesCS3B01G432200.1	Wheat	cytosol	66.67	66.67
TraesCS3D01G393400.1	Wheat	cytosol	66.67	66.67
Os08t0250700-01	Rice	cytosol	66.19	66.19
TraesCS3A01G399200.1	Wheat	cytosol	66.19	66.19
EES14790	Sorghum	cytosol	66.19	65.88
HORVU3Hr1G089950.1	Barley	cytosol	65.71	65.4
Zm00001d050225_P001	Maize	cytosol	65.71	65.09
CDY49291	Canola	mitochondrion	26.67	60.87
CDY26529	Canola	cytosol	37.62	34.35
CDY57635	Canola	cytosol	37.14	33.91
CDX77968	Canola	cytosol	36.67	33.48
CDX73765	Canola	cytosol	36.19	33.04

Protein Annotations

EnsemblPlants:CDX75419	EnsemblPlantsGene:GSBRNA2T00121307001	Gene3D:3.40.30.10	InterPro:Phosducin_thioredoxin-like_dom	InterPro:Thioredoxin-like_sf	ncoils:Coil
PANTHER:PTHR21148	PANTHER:PTHR21148:SF11	PFAM:PF02114	ProteinID:AID60141.1	ProteinID:CDX75419	ProteinID:CDX75419.1
SUPFAM:SSF52833	UniParc:UPI0004A885A4	UniProt:A0A068FB24	MapMan:35.1	:	:

Description

BnaA01g02830DBnaA01g02830D protein [Source:UniProtKB/TrEMBL;Acc:A0A068FB24]

Coordinates

chrLK031804:-:1022975..1024350

Molecular Weight (calculated)

24376.1 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.780

Length

210 amino acids

Sequence
(BLAST)

001: MDNPIQEILE KQLLTVAKAM EDKLDEEIAS LEKPDEDDLE VLRERRLQQM KKMAEKRKRW MSHGHGEYTE IPSEKDFFAA VKASERVVCH FYRENWPCKV
101: MDKHMGILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERLARAQVIH YEGESSHKPK STTQTKRSVR
201: QSARSDSDSE

Best Arabidopsis Sequence Match ( AT3G25580.1 )
(BLAST)

001: MANPIQEIIE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW MSIGHGEYSE IHSEKDFFSV VKSSERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YEGESSLKQK STTQVRRNVR
201: QSARSDSDSE

Arabidopsis Description

Thioredoxin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LSU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.