Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72476 | Canola | cytosol | 80.18 | 80.91 |
| CDY49291 | Canola | mitochondrion | 51.35 | 61.96 |
| CDX75419 | Canola | nucleus | 84.68 | 44.76 |
| AT2G18990.1 | Thale cress | cytosol | 84.68 | 44.55 |
| CDX69045 | Canola | cytosol | 83.78 | 44.29 |
| AT3G25580.1 | Thale cress | nucleus | 78.38 | 41.43 |
| KRH35706 | Soybean | cytosol | 69.37 | 36.15 |
| Os08t0250700-01 | Rice | cytosol | 64.86 | 34.29 |
| KRG91066 | Soybean | cytoskeleton, cytosol, nucleus | 64.86 | 33.8 |
| TraesCS3D01G393400.1 | Wheat | cytosol | 63.06 | 33.33 |
| TraesCS3B01G432200.1 | Wheat | cytosol | 63.06 | 33.33 |
| TraesCS3A01G399200.1 | Wheat | cytosol | 63.06 | 33.33 |
| PGSC0003DMT400034610 | Potato | cytosol | 63.96 | 33.18 |
| GSMUA_Achr9P21300_001 | Banana | cytosol | 62.16 | 32.7 |
| VIT_03s0091g00380.t01 | Wine grape | cytosol | 62.16 | 32.55 |
| Zm00001d050225_P001 | Maize | cytosol | 62.16 | 32.55 |
| Solyc11g012730.1.1 | Tomato | cytosol | 62.16 | 32.55 |
| EES14790 | Sorghum | cytosol | 61.26 | 32.23 |
| HORVU3Hr1G089950.1 | Barley | cytosol | 60.36 | 31.75 |
| KRH13153 | Soybean | cytosol | 31.53 | 22.73 |
| CDY57635 | Canola | cytosol | 36.04 | 17.39 |
| CDY26529 | Canola | cytosol | 36.04 | 17.39 |
| CDX77968 | Canola | cytosol | 36.04 | 17.39 |
| CDX73765 | Canola | cytosol | 36.04 | 17.39 |
Protein Annotations
| EnsemblPlants:CDX72474 | EnsemblPlantsGene:GSBRNA2T00100000001 | Gene3D:3.40.30.10 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR21148 | PANTHER:PTHR21148:SF11 |
| ProteinID:CDX72474 | ProteinID:CDX72474.1 | SUPFAM:SSF52833 | UniParc:UPI0004EEAA2E | MapMan:35.1 | : |
Description
BnaC07g44960D
Coordinates
chrLK031796:-:1467711..1468127
Molecular Weight (calculated)
12592.9 Da
IEP (calculated)
6.680
GRAVY (calculated)
-0.614
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKHMCVFAK QHTETRFVKI HAEKSPFLAE GLKIVVLPTL ALIKNTKIDD YVVGFNELGG RDDYITEDLE ERLARAQVIH YEGESSSHKP KSMTQARRSV
101: RQSANSDSDS E
101: RQSANSDSDS E
001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E
Arabidopsis Description
TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.