Factsheet for TraesCS3B01G432200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25580.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT3G25580.1	TraesCS2D01G505300.1	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G393400.1	Wheat	cytosol	99.52	99.52
TraesCS3A01G399200.1	Wheat	cytosol	99.52	99.52
HORVU3Hr1G089950.1	Barley	cytosol	93.81	93.36
EES14790	Sorghum	cytosol	86.67	86.26
Os08t0250700-01	Rice	cytosol	85.24	85.24
Zm00001d050225_P001	Maize	cytosol	84.76	83.96
AT2G18990.1	Thale cress	cytosol	67.14	66.82
CDX75419	Canola	nucleus	66.67	66.67
CDX69045	Canola	cytosol	66.19	66.19
VIT_03s0091g00380.t01	Wine grape	cytosol	66.67	66.04
GSMUA_Achr9P21300_001	Banana	cytosol	66.19	65.88
KRH35706	Soybean	cytosol	66.67	65.73
Bra011517.1-P	Field mustard	cytosol	65.71	65.71
AT3G25580.1	Thale cress	nucleus	64.29	64.29
Solyc11g012730.1.1	Tomato	cytosol	64.76	64.15
KRG91066	Soybean	cytoskeleton, cytosol, nucleus	64.76	63.85
PGSC0003DMT400034610	Potato	cytosol	64.76	63.55
CDX72474	Canola	cytosol	33.33	63.06
KRH13153	Soybean	cytosol	45.71	62.34
CDX72476	Canola	cytosol	31.43	60.0
Bra017642.1-P	Field mustard	endoplasmic reticulum	40.0	52.17
CDY49291	Canola	mitochondrion	20.0	45.65
TraesCS7B01G044100.1	Wheat	cytosol	33.33	30.43

Protein Annotations

EnsemblPlants:TraesCS3B01G432200.1	EnsemblPlantsGene:TraesCS3B01G432200	Gene3D:3.40.30.10	GO:GO:0008150	GO:GO:0009987	GO:GO:0019725
GO:GO:0045454	InterPro:IPR013766	InterPro:Thioredoxin-like_sf	InterPro:Thioredoxin_domain	ncoils:Coil	PANTHER:PTHR21148
PANTHER:PTHR21148:SF11	PFAM:PF00085	SEG:seg	SUPFAM:SSF52833	TIGR:cd02989	MapMan:35.1

Description

No Description!

Coordinates

chr3B:+:671266598..671270179

Molecular Weight (calculated)

23728.3 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.539

Length

210 amino acids

Sequence
(BLAST)

001: MDGVIGQILE KQVLSAAKAV EDKLDEQIAA LERLDPDDIE ALRERRMLQM RRAAERRAKW RALGHGEYTE VPEKEFFSAA KASERMVCHF YRDNWPCKVM
101: DKHMSILAKQ HVETRFIKVH AEKAPFLTEK LRVVVLPTLA LVKNAKVEDY VVGFDELGGK DDFSTEDLEE RIAKAQVIFL DGEGPANPSK QAAASKRSVR
201: QSDTGNSDSD

Best Arabidopsis Sequence Match ( AT2G18990.1 )
(BLAST)

001: MANPIQEILE KQVLTVAKAM EDKIDDEIAS LEKLDEDDLE VLRERRLKQM KKMAEKKKRW ISLGHGEYSE IHSEKDFFSV VKASERVVCH FYRENWPCKV
101: MDKHMSILAK QHIETRFVKI QAEKSPFLAE RLKIVVLPTL ALIKNTKVDD YVVGFNELGG KDDFSTEDLE ERIARAQVIH YDGESSSLKP KSTTQVRRNV
201: RQSARSDSDS E

Arabidopsis Description

TXND9Thioredoxin domain-containing protein 9 homolog [Source:UniProtKB/Swiss-Prot;Acc:O64628]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.