Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G309300.1 | Wheat | nucleus, plastid | 97.25 | 97.25 |
| TraesCS1A01G309800.1 | Wheat | nucleus | 94.72 | 94.72 |
| TraesCS1B01G321000.1 | Wheat | nucleus | 89.68 | 89.68 |
| HORVU1Hr1G068160.2 | Barley | nucleus, plastid | 90.14 | 88.71 |
| HORVU0Hr1G026010.1 | Barley | nucleus, plastid | 90.14 | 88.71 |
| HORVU0Hr1G001680.1 | Barley | nucleus | 64.45 | 87.81 |
| HORVU1Hr1G068010.7 | Barley | mitochondrion, nucleus | 80.96 | 84.05 |
| HORVU1Hr1G068080.1 | Barley | plastid | 65.6 | 83.63 |
| HORVU0Hr1G001690.16 | Barley | nucleus, peroxisome | 82.34 | 81.96 |
| EES18429 | Sorghum | mitochondrion | 63.76 | 60.43 |
| Zm00001d010656_P001 | Maize | nucleus | 61.7 | 60.31 |
| TraesCS3B01G363200.3 | Wheat | nucleus | 61.7 | 58.35 |
| Os05t0493500-00 | Rice | nucleus | 62.39 | 55.85 |
| PGSC0003DMT400058457 | Potato | nucleus | 49.77 | 51.91 |
| Solyc01g009040.2.1 | Tomato | nucleus | 50.69 | 50.8 |
| CDY69551 | Canola | nucleus | 40.83 | 50.14 |
| CDY62475 | Canola | nucleus | 40.14 | 49.86 |
| KRH66720 | Soybean | endoplasmic reticulum, vacuole | 22.71 | 49.75 |
| VIT_08s0040g00930.t01 | Wine grape | nucleus | 50.92 | 49.01 |
| KRH14611 | Soybean | nucleus | 49.08 | 48.75 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.26 | 48.66 |
| KRH73516 | Soybean | nucleus | 48.85 | 48.41 |
| Bra002046.1-P | Field mustard | nucleus | 43.35 | 48.09 |
| PGSC0003DMT400015245 | Potato | nucleus | 48.39 | 48.06 |
| AT2G26760.1 | Thale cress | nucleus | 42.66 | 48.06 |
| Bra028741.1-P | Field mustard | nucleus | 45.64 | 47.95 |
| VIT_06s0009g02090.t01 | Wine grape | nucleus | 45.87 | 47.85 |
| AT3G11520.1 | Thale cress | nucleus | 45.41 | 47.83 |
| Solyc06g073610.2.1 | Tomato | nucleus | 47.94 | 47.5 |
| Bra005880.1-P | Field mustard | nucleus, plastid | 44.95 | 47.34 |
| KRG95055 | Soybean | nucleus | 49.31 | 47.25 |
| KRH66715 | Soybean | nucleus | 42.43 | 47.19 |
| VIT_13s0067g01420.t01 | Wine grape | nucleus | 49.77 | 46.97 |
| KRH66713 | Soybean | nucleus | 48.85 | 46.92 |
| CDX80988 | Canola | plastid | 45.87 | 46.73 |
| PGSC0003DMT400018480 | Potato | nucleus | 45.41 | 46.59 |
| CDY11354 | Canola | plastid | 45.87 | 46.19 |
| Solyc10g080950.1.1 | Tomato | nucleus | 48.62 | 45.89 |
| Solyc10g078330.1.1 | Tomato | nucleus | 44.5 | 45.86 |
| PGSC0003DMT400072211 | Potato | nucleus | 48.62 | 45.69 |
| AT5G06150.1 | Thale cress | nucleus | 45.87 | 44.94 |
| AT4G37490.1 | Thale cress | nucleus | 43.58 | 44.39 |
| CDX69311 | Canola | nucleus | 42.2 | 43.91 |
| Bra011769.1-P | Field mustard | nucleus | 42.43 | 43.22 |
| CDX75659 | Canola | nucleus | 42.43 | 43.22 |
| KRH66718 | Soybean | plastid | 36.93 | 43.16 |
| KRG95056 | Soybean | cytosol | 36.24 | 40.83 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 34.17 | 35.56 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 33.26 | 35.45 |
| TraesCS4B01G078300.1 | Wheat | nucleus | 28.21 | 33.15 |
| TraesCS5B01G078200.1 | Wheat | plastid | 27.75 | 32.1 |
| TraesCS1B01G151800.3 | Wheat | nucleus | 25.23 | 30.99 |
| CDY14091 | Canola | plastid | 45.64 | 30.34 |
| AT1G34460.5 | Thale cress | cytosol | 33.03 | 28.92 |
| CDY04980 | Canola | nucleus | 45.41 | 27.58 |
| TraesCS4B01G254000.1 | Wheat | nucleus | 23.39 | 27.13 |
| TraesCS4B01G253100.1 | Wheat | nucleus | 21.1 | 26.98 |
| TraesCS3B01G183400.1 | Wheat | plastid | 29.82 | 25.49 |
| TraesCS5B01G114300.2 | Wheat | plastid | 28.44 | 24.46 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G320900.1 | EnsemblPlantsGene:TraesCS1B01G320900 | Gene3D:1.10.472.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF267 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 | SEG:seg |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:13.1.1.1.2 | : |
Description
No Description!
Coordinates
chr1B:+:545072265..545074588
Molecular Weight (calculated)
47940.1 Da
IEP (calculated)
9.883
GRAVY (calculated)
-0.204
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRHNQQNA AAAPQPAANR GAAGKQKGAA AGRPGAGGNR RVLGDIGNVV HAHVLDGKIQ LPAGINRPIT RSFGAQLLKK AQAEPSKNAV AVPPAERAGL
101: KPVAKKVPVK PAAAPRPEPA AAKIVTGSDE IRKPSEVSAP KTSRKKVVHT LTTVLNHRSK EASIDDIDKL DGDNELAVVD YIDDIYKYYK EAQHEWRPID
201: YMGSQTEVNP KMRAILIDWL VEVTHKFELM PESMYLTIYV IDRFLSLQAV PRRELQLVGM AAMLIACKYE EIWAPEVNDF ISIADNSYSR QQILSMEKNI
301: LNSMAWNLTV PTPYVFLVRF AKAAGSDKEL ENMIFFFAEL ALMEYGLVTV RPSLVAASAV YAARCTLKRS PIWTETLKHH TGFAEPQLLE PAKMLVMAHA
401: AAPDSKLKAI YKKYSCEQYG RVSLRAPAVA APQRLA
101: KPVAKKVPVK PAAAPRPEPA AAKIVTGSDE IRKPSEVSAP KTSRKKVVHT LTTVLNHRSK EASIDDIDKL DGDNELAVVD YIDDIYKYYK EAQHEWRPID
201: YMGSQTEVNP KMRAILIDWL VEVTHKFELM PESMYLTIYV IDRFLSLQAV PRRELQLVGM AAMLIACKYE EIWAPEVNDF ISIADNSYSR QQILSMEKNI
301: LNSMAWNLTV PTPYVFLVRF AKAAGSDKEL ENMIFFFAEL ALMEYGLVTV RPSLVAASAV YAARCTLKRS PIWTETLKHH TGFAEPQLLE PAKMLVMAHA
401: AAPDSKLKAI YKKYSCEQYG RVSLRAPAVA APQRLA
001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS
Arabidopsis Description
CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.