CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70711
CDX76164
CDX77145
CDX78706
CDX80511
CDX80516
CDX88180
CDX89193
CDX93704
CDX93706
CDX96319
CDY01345
CDY03686
CDY03687
CDY04139
CDY05493
CDY06213
CDY13189
CDY17426
CDY18994
CDY19801
CDY30517
CDY31856
CDY34315
CDY37936
CDY37939
CDY54909
CDY59893
CDY60074
CDY65178
CDY66787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06150.1	CDY01345	AT1G20930.1	20706207
AT5G06150.1	CDY31856	AT1G20930.1	20706207
AT5G06150.1	CDX93704	AT1G48920.1	20706207
AT5G06150.1	CDX93706	AT1G48920.1	20706207
AT5G06150.1	CDY59893	AT1G48920.1	20706207
AT5G06150.1	CDY60074	AT1G48920.1	20706207
AT5G06150.1	CDY65178	AT1G48920.1	20706207
AT5G06150.1	CDX96319	AT1G71380.1	20706207
AT5G06150.1	CDY03686	AT1G71380.1	20706207
AT5G06150.1	CDY03687	AT1G71380.1	20706207
AT5G06150.1	CDY37936	AT1G71380.1	20706207
AT5G06150.1	CDY37939	AT1G71380.1	20706207
AT5G06150.1	CDY66787	AT1G71380.1	20706207
AT5G06150.1	CDX77145	AT2G27970.1	20706207
AT5G06150.1	CDY30517	AT2G27970.1	20706207
AT5G06150.1	CDX70711	AT3G11270.1	20706207
AT5G06150.1	CDX78706	AT3G11270.1	20706207
AT5G06150.1	CDY04139	AT3G11270.1	20706207
AT5G06150.1	CDY06213	AT3G11270.1	20706207
AT5G06150.1	CDY17426	AT3G11270.1	20706207
AT5G06150.1	CDX76164	AT3G54180.1	20706207
AT5G06150.1	CDY13189	AT3G54180.1	20706207
AT5G06150.1	CDY34315	AT4G24820.1	20706207
AT5G06150.1	CDX89193	AT4G28230.1	20706207
AT5G06150.1	CDY18994	AT4G28230.1	20706207
AT5G06150.1	CDX80511	AT5G25460.1	20706207
AT5G06150.1	CDX80516	AT5G25460.1	20706207
AT5G06150.1	CDX88180	AT5G25460.1	20706207
AT5G06150.1	CDY05493	AT5G25460.1	20706207
AT5G06150.1	CDY19801	AT5G25460.1	20706207
AT5G06150.1	CDY54909	AT5G25460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028741.1-P	Field mustard	nucleus	59.3	93.73
CDY11354	Canola	plastid	54.27	82.22
CDX80988	Canola	plastid	53.2	81.54
AT5G06150.1	Thale cress	nucleus	54.27	80.0
CDY04980	Canola	nucleus	84.91	77.58
CDY69551	Canola	nucleus	37.04	68.45
CDY62475	Canola	nucleus	36.59	68.38
KRH66720	Soybean	endoplasmic reticulum, vacuole	17.99	59.3
TraesCSU01G217300.1	Wheat	cytosol	18.29	55.56
KRG95055	Soybean	nucleus	37.2	53.63
VIT_08s0040g00930.t01	Wine grape	nucleus	36.89	53.42
KRH66715	Soybean	nucleus	31.86	53.32
KRH66713	Soybean	nucleus	36.74	53.08
GSMUA_Achr4P10090_001	Banana	nucleus	34.15	52.71
CDX69311	Canola	nucleus	33.54	52.51
Zm00001d019469_P001	Maize	extracellular	11.43	52.45
CDX75659	Canola	nucleus	33.84	51.87
VIT_13s0067g01420.t01	Wine grape	nucleus	35.82	50.87
Solyc10g078330.1.1	Tomato	nucleus	32.16	49.88
KRH66718	Soybean	plastid	28.35	49.87
GSMUA_Achr7P21380_001	Banana	nucleus	34.6	49.67
PGSC0003DMT400018480	Potato	nucleus	32.01	49.41
AT1G34460.5	Thale cress	cytosol	37.35	49.2
GSMUA_Achr10P...	Banana	nucleus	33.84	49.01
GSMUA_Achr8P23970_001	Banana	nucleus	32.16	48.51
HORVU0Hr1G001680.1	Barley	nucleus	23.63	48.44
EES03772	Sorghum	nucleus, plastid	33.08	48.33
GSMUA_AchrUn_...	Banana	nucleus	21.95	48.32
Solyc10g080950.1.1	Tomato	nucleus	33.99	48.27
PGSC0003DMT400072211	Potato	nucleus	33.84	47.84
GSMUA_Achr3P24980_001	Banana	nucleus	28.51	46.52
KXG24389	Sorghum	nucleus	17.84	46.43
HORVU3Hr1G078880.2	Barley	nucleus	32.01	46.36
TraesCS1D01G309300.1	Wheat	nucleus, plastid	30.79	46.33
Zm00001d012560_P002	Maize	nucleus, plastid	31.71	46.33
HORVU1Hr1G068080.1	Barley	plastid	23.93	45.91
TraesCS3B01G363200.3	Wheat	nucleus	32.16	45.77
KRG95056	Soybean	cytosol	26.98	45.74
TraesCS1B01G320900.1	Wheat	nucleus, plastid	30.34	45.64
TraesCS3D01G326600.1	Wheat	nucleus	31.55	45.49
TraesCS1A01G309800.1	Wheat	nucleus	30.18	45.41
HORVU1Hr1G068010.7	Barley	mitochondrion, nucleus	28.96	45.24
TraesCS3A01G333000.2	Wheat	nucleus	31.71	45.22
TraesCS1D01G309400.1	Wheat	nucleus	29.73	44.62
HORVU0Hr1G026010.1	Barley	nucleus, plastid	29.88	44.24
HORVU1Hr1G068160.2	Barley	nucleus, plastid	29.88	44.24
HORVU0Hr1G001690.16	Barley	nucleus, peroxisome	29.42	44.06
TraesCS1B01G321000.1	Wheat	nucleus	29.12	43.81
Zm00001d043164_P002	Maize	nucleus	32.01	43.39
CDY31481	Canola	nucleus	14.33	43.32
Zm00001d010656_P001	Maize	nucleus	29.27	43.05
Os01t0281200-01	Rice	nucleus	26.83	41.61
EES18429	Sorghum	mitochondrion	29.12	41.52
TraesCS3A01G192100.1	Wheat	nucleus, plastid	25.61	40.58
TraesCS3D01G195200.1	Wheat	plastid	25.3	40.19
Os05t0493500-00	Rice	nucleus	29.12	39.22
TraesCS7A01G229300.1	Wheat	endoplasmic reticulum	19.66	39.21
CDY26816	Canola	nucleus	23.93	38.57
CDY29184	Canola	nucleus	24.54	38.42
CDY07838	Canola	nucleus	24.39	38.28
CDX85942	Canola	nucleus	23.48	37.75
EES02793	Sorghum	nucleus	26.07	36.93
CDY30357	Canola	nucleus	23.02	36.92
CDX72551	Canola	nucleus	22.56	36.91
Zm00001d008221_P001	Maize	nucleus	26.68	36.53
CDX96631	Canola	nucleus	22.56	36.1
CDY67210	Canola	nucleus	22.26	35.96
CDX68105	Canola	nucleus	21.65	35.95
CDY06752	Canola	nucleus	15.55	35.79
CDY33634	Canola	nucleus	22.1	35.54
CDX88261	Canola	nucleus	23.02	35.12
CDX87612	Canola	nucleus	23.02	35.03
Os02t0627800-00	Rice	cytosol, mitochondrion, peroxisome	21.04	34.85
CDY29520	Canola	nucleus	21.65	34.63
HORVU3Hr1G040990.2	Barley	nucleus, plastid	25.76	34.35
CDY66770	Canola	nucleus	18.29	33.15
CDY06757	Canola	nucleus, plastid	18.29	33.06
CDY22369	Canola	nucleus	17.68	33.05
CDY23653	Canola	nucleus	17.84	32.77
CDY47596	Canola	nucleus	17.84	32.23
CDY17039	Canola	nucleus	17.68	31.96
CDY17091	Canola	nucleus	17.38	31.84
Zm00001d020033_P001	Maize	nucleus	26.22	31.62
CDY17037	Canola	nucleus, plastid	17.53	31.59
CDY62408	Canola	nucleus, plasma membrane, plastid	10.06	31.28
CDY47595	Canola	nucleus, plastid	17.68	31.27
Zm00001d020996_P001	Maize	nucleus	25.61	30.88
CDX88368	Canola	plastid	17.68	30.53
CDY41784	Canola	plastid	15.24	29.41
CDX87520	Canola	nucleus	17.07	29.02
CDX87087	Canola	plastid	17.99	28.3
CDY61993	Canola	nucleus	16.16	28.12
CDX92090	Canola	mitochondrion, nucleus	15.24	28.01
CDY02719	Canola	plastid	18.14	27.74
CDX85466	Canola	plastid	17.84	27.73
CDY48212	Canola	nucleus	15.55	27.06
CDX81722	Canola	nucleus, plastid	16.62	27.05
CDY53304	Canola	plastid	16.77	26.89
CDY65994	Canola	plastid	17.38	25.73
CDX79389	Canola	plastid	16.92	25.64
CDY66415	Canola	nucleus	16.92	25.58
CDY36574	Canola	mitochondrion, nucleus	16.77	25.23
CDX67944	Canola	plastid	16.46	25.0
CDY25649	Canola	plastid	16.62	24.94
CDX96836	Canola	nucleus, plastid	16.62	24.77
CDY39984	Canola	plastid	16.77	24.55
CDX97090	Canola	nucleus	16.31	24.54
CDX69768	Canola	nucleus, plastid	16.31	24.49
CDY33338	Canola	nucleus	21.49	24.14
CDX87305	Canola	plastid	16.92	24.03
CDY38664	Canola	nucleus, plastid	16.46	23.74
CDY37592	Canola	mitochondrion, plastid	16.46	23.63
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	21.04	22.66
CDX96819	Canola	nucleus	21.04	21.4
CDX83953	Canola	nucleus	20.58	20.61
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	17.53	11.63

Protein Annotations

Gene3D:1.10.472.10	Gene3D:1.20.1270.60	MapMan:13.1.1.1.2	GO:A0A078FM07	UniProt:A0A078FM07	InterPro:AH/BAR_dom_sf
EnsemblPlants:CDY14091	ProteinID:CDY14091	ProteinID:CDY14091.1	ncoils:Coil	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00078630001	InterPro:IPR027267	PFAM:PF00134	PFAM:PF02984
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF267	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
TMHMM:TMhelix	UniParc:UPI0004EF4423	SEG:seg	:	:	:

Description

BnaC02g02080DBnaC02g02080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM07]

Coordinates

chrLK032040:+:394017..397826

Molecular Weight (calculated)

73748.7 Da

IEP (calculated)

9.182

GRAVY (calculated)

-0.266

Length

656 amino acids

Sequence
(BLAST)

001: MTVGIQPLAP LHKTSALSPS FFITISQSSK KSKNLQERAL MATRTNMPEQ VRGVPVADGV KKNGAVKNRR ALGDIGNHLV AVPLAQGGKP INRPITRSFR
101: AQLLANANGG ENKAPVLAAK KPQPLVPKKN LAVKKEAAPA AAVSPPKNKK VTYSSVLSAR SKAACGVVTN KPKKILDIDE SDKDNHLAAV EYVEDMYSFY
201: KEVEKESQPK MYMHIQTEMN EKMRAILVDW LLEVNVKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYN
301: SKQILVMEKT ILGNLEWYLT VPTQYVFLVR FIKASVSDPE MENMVHFLAE LGMMHYDTLK FCPSMLAASA VYTARCSLNK SPAWTDTLKF HTGYSESEIM
401: ECSKVLALHH SRCGESKLRA VYKKYSKIEN GGVALVSPAK SLLSPAADDV QSKVSDAILG KEKPVEETTP EYEKLKHYVF ELENHLAEAQ KHAYRLVKRH
501: RELGQSLLDF GKAVKLLGAC EGEPTGKAFS DLGTKSELLS IKLQKEATIA ERGIAFRQHC ELAETTKLKE INLDKLMLTR SEKVGEAENE YREIKAESEE
601: ATIRFERIVK RMNEEIVRFQ AEKTEEMGLM LGELFFPNLK LLLLLFWCFY FCQLQR

Best Arabidopsis Sequence Match ( AT5G06150.1 )
(BLAST)

001: MATRANVPEQ VRGAPLVDGL KIQNKNGAVK SRRALGDIGN LVSVPGVQGG KAQPPINRPI TRSFRAQLLA NAQLERKPIN GDNKVPALGP KRQPLAARNP
101: EAQRAVQKKN LVVKQQTKPV EVIETKKEVT KKEVAMSPKN KKVTYSSVLS ARSKAACGIV NKPKIIDIDE SDKDNHLAAV EYVDDMYSFY KEVEKESQPK
201: MYMHIQTEMN EKMRAILIDW LLEVHIKFEL NLETLYLTVN IIDRFLSVKA VPKRELQLVG ISALLIASKY EEIWPPQVND LVYVTDNAYS SRQILVMEKA
301: ILGNLEWYLT VPTQYVFLVR FIKASMSDPE MENMVHFLAE LGMMHYDTLT FCPSMLAASA VYTARCSLNK SPAWTDTLQF HTGYTESEIM DCSKLLAFLH
401: SRCGESRLRA VYKKYSKAEN GGVAMVSPAK SLLSAAADWK KPVSS

Arabidopsis Description

CYCB1-2Cyclin-B1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39067]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.