CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67405
CDX69704
CDX71081
CDX72118
CDX72732
CDX74521
CDX85699
CDX90298
CDX91170
CDX95121
CDX96319
CDX97171
CDY01659
CDY03686
CDY03687
CDY04583
CDY06280
CDY06468
CDY07783
CDY08312
CDY12108
CDY22407
CDY22719
CDY32809
CDY34315
CDY37936
CDY37939
CDY47311
CDY47314
CDY52801
CDY53035
CDY56774
CDY60565
CDY61895
CDY64278
CDY66787
CDY69288
CDY71290
CDY72634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35620.1	CDY06280	AT1G07660.1	20706207
AT4G35620.1	CDX95121	AT1G07820.1	20706207
AT4G35620.1	CDX96319	AT1G71380.1	20706207
AT4G35620.1	CDY03686	AT1G71380.1	20706207
AT4G35620.1	CDY03687	AT1G71380.1	20706207
AT4G35620.1	CDY37936	AT1G71380.1	20706207
AT4G35620.1	CDY37939	AT1G71380.1	20706207
AT4G35620.1	CDY66787	AT1G71380.1	20706207
AT4G35620.1	CDY04583	AT2G28740.1	20706207
AT4G35620.1	CDY07783	AT3G45930.1	20706207
AT4G35620.1	CDY22719	AT3G45930.1	20706207
AT4G35620.1	CDY52801	AT3G45970.1	20706207
AT4G35620.1	CDY61895	AT3G45970.1	20706207
AT4G35620.1	CDY64278	AT3G45970.1	20706207
AT4G35620.1	CDY69288	AT3G45970.1	20706207
AT4G35620.1	CDY72634	AT3G45970.1	20706207
AT4G35620.1	CDY32809	AT3G46320.1	20706207
AT4G35620.1	CDX71081	AT3G53730.1	20706207
AT4G35620.1	CDX72118	AT3G56690.1	20706207
AT4G35620.1	CDY56774	AT3G56690.1	20706207
AT4G35620.1	CDY06468	AT4G13850.1	20706207
AT4G35620.1	CDY08312	AT4G13850.1	20706207
AT4G35620.1	CDY47311	AT4G13850.1	20706207
AT4G35620.1	CDY47314	AT4G13850.1	20706207
AT4G35620.1	CDY53035	AT4G13850.1	20706207
AT4G35620.1	CDY34315	AT4G24820.1	20706207
AT4G35620.1	CDX72732	AT4G38900.1	20706207
AT4G35620.1	CDX90298	AT4G38900.1	20706207
AT4G35620.1	CDY12108	AT4G38900.1	20706207
AT4G35620.1	CDY22407	AT4G38900.1	20706207
AT4G35620.1	CDX69704	AT5G12140.1	20706207
AT4G35620.1	CDX85699	AT5G12140.1	20706207
AT4G35620.1	CDX91170	AT5G12140.1	20706207
AT4G35620.1	CDX97171	AT5G12140.1	20706207
AT4G35620.1	CDX67405	AT5G38480.1	20706207
AT4G35620.1	CDX74521	AT5G38480.1	20706207
AT4G35620.1	CDY01659	AT5G38480.1	20706207
AT4G35620.1	CDY71290	AT5G38480.1	20706207
AT4G35620.1	CDY60565	AT5G59690.1	20706207
AT4G35620.1	CDY32809	AT5G59970.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017726.1-P	Field mustard	nucleus	99.01	99.01
CDX72551	Canola	nucleus	95.57	96.76
AT4G35620.1	Thale cress	nucleus	85.71	81.12
CDY30357	Canola	nucleus	74.14	73.59
CDY26816	Canola	nucleus	72.66	72.48
CDY07838	Canola	nucleus	72.17	70.1
CDY29184	Canola	nucleus	72.17	69.93
CDY31481	Canola	nucleus	34.48	64.52
KRH76553	Soybean	nucleus	62.81	59.03
KRH28901	Soybean	nucleus	62.32	58.43
GSMUA_Achr5P19270_001	Banana	cytosol	30.3	56.68
PGSC0003DMT400093973	Potato	nucleus	45.07	55.45
Solyc02g061650.1.1	Tomato	nucleus	47.54	54.99
CDX85942	Canola	nucleus	55.17	54.9
CDX68105	Canola	nucleus	51.97	53.42
CDY33634	Canola	nucleus	52.46	52.21
CDX87612	Canola	nucleus	54.93	51.74
CDX96631	Canola	nucleus	52.22	51.71
CDX88261	Canola	nucleus	54.68	51.63
GSMUA_Achr11P...	Banana	nucleus	50.99	50.74
CDY29520	Canola	nucleus	50.99	50.49
GSMUA_Achr8P13320_001	Banana	nucleus	51.23	49.52
GSMUA_Achr5P19110_001	Banana	nucleus	50.99	48.82
Os06t0726800-01	Rice	nucleus	50.25	48.69
TraesCS2B01G422800.1	Wheat	nucleus	49.01	48.66
KXG20945	Sorghum	nucleus	50.74	48.58
HORVU0Hr1G022770.1	Barley	nucleus, plastid	33.25	48.56
TraesCS2A01G404800.1	Wheat	nucleus	48.28	48.4
EES12664	Sorghum	nucleus	51.48	48.38
Zm00001d026129_P001	Maize	nucleus	50.74	48.36
Zm00001d036360_P002	Maize	nucleus	50.25	48.11
Os04t0563700-01	Rice	mitochondrion	49.75	48.1
HORVU7Hr1G121820.6	Barley	nucleus	49.51	47.86
TraesCS2D01G401700.1	Wheat	nucleus, plastid	49.26	47.51
TraesCS7D01G536000.1	Wheat	nucleus	48.52	47.02
TraesCS7B01G472800.1	Wheat	nucleus	48.28	46.78
TraesCS7A01G549500.1	Wheat	nucleus	48.28	46.78
Zm00001d002662_P010	Maize	nucleus	50.74	45.27
HORVU2Hr1G096070.2	Barley	nucleus	47.78	41.19
CDY06752	Canola	nucleus	26.11	37.19
CDY62475	Canola	nucleus	32.02	37.04
CDY69551	Canola	nucleus	31.77	36.34
CDY11354	Canola	plastid	36.21	33.95
CDY62408	Canola	nucleus, plasma membrane, plastid	17.49	33.65
CDX80988	Canola	plastid	35.47	33.64
CDX88368	Canola	plastid	31.28	33.42
CDY41784	Canola	plastid	27.83	33.24
CDX87520	Canola	nucleus	31.03	32.64
CDY17091	Canola	nucleus	28.57	32.4
CDY22369	Canola	nucleus	27.83	32.19
CDY66770	Canola	nucleus	28.57	32.04
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	52.71	32.04
CDY17039	Canola	nucleus	28.57	31.96
CDY47596	Canola	nucleus	28.57	31.96
CDY06757	Canola	nucleus, plastid	28.57	31.96
CDY23653	Canola	nucleus	28.08	31.93
CDX69311	Canola	nucleus	32.76	31.74
CDX75659	Canola	nucleus	33.25	31.54
CDY17037	Canola	nucleus, plastid	28.08	31.32
CDY47595	Canola	nucleus, plastid	28.08	30.73
CDY61993	Canola	nucleus	27.83	29.97
CDY48212	Canola	nucleus	27.83	29.97
CDX92090	Canola	mitochondrion, nucleus	26.11	29.69
CDX85466	Canola	plastid	29.8	28.67
CDY02719	Canola	plastid	30.05	28.44
CDY53304	Canola	plastid	28.57	28.36
CDX96836	Canola	nucleus, plastid	30.05	27.73
CDX81722	Canola	nucleus, plastid	27.09	27.3
CDX97090	Canola	nucleus	29.31	27.29
CDX79389	Canola	plastid	29.06	27.25
CDX87087	Canola	plastid	27.83	27.1
CDX67944	Canola	plastid	28.82	27.08
CDX69768	Canola	nucleus, plastid	29.06	27.0
CDY36574	Canola	mitochondrion, nucleus	28.82	26.83
CDY66415	Canola	nucleus	28.57	26.73
CDY65994	Canola	plastid	29.06	26.64
CDY38664	Canola	nucleus, plastid	29.56	26.37
CDY25649	Canola	plastid	28.33	26.32
CDY37592	Canola	mitochondrion, plastid	28.82	25.6
CDY39984	Canola	plastid	28.08	25.45
CDX87305	Canola	plastid	28.82	25.32
CDY33338	Canola	nucleus	34.48	23.97
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	34.48	22.99
CDY14091	Canola	plastid	35.96	22.26
CDX96819	Canola	nucleus	35.22	22.17
CDX83953	Canola	nucleus	34.73	21.53
CDY04980	Canola	nucleus	36.21	20.47
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	28.08	11.53

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	GO:A0A078JLB0	UniProt:A0A078JLB0	EnsemblPlants:CDY67210	ProteinID:CDY67210
ProteinID:CDY67210.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00059771001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF336	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0004EF0E92	SEG:seg	:	:	:

Description

BnaAnng23850DBnaAnng23850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLB0]

Coordinates

chrLK035868:-:1277..3475

Molecular Weight (calculated)

46810.0 Da

IEP (calculated)

4.529

GRAVY (calculated)

-0.333

Length

406 amino acids

Sequence
(BLAST)

001: MVNQEPITAI LQDETRRSTK LGLEMKIQNR RALSVINQNL VVAKAYPCVV NKRRGLSESQ EETKKLKPSV PSGNEFGDCI FIDDEEEEEE EAATLDQSMP
101: MSLEEPYIES DPMEEEVEME EEEQEPVLDI DVDDAHNPLA VIEYVQDLHE FYRKNERFSC VPQDYMAQQY DITDKMRAIL IDWLIEVHDK FELMNETLYL
201: TVNLIDRFLS KQAVVRKKLQ LVGLVALLLA CKYEEVSVPI VEDLVVISDK AYTRNDVLEM EKIMLNTLQF NMSLPTQYPF LKRFLKAAQS DKKLEMLASF
301: LMELALVDYE MLRYPPSLLA ASAVYTAQCT IHGFSEWNST CEFHSHYSED QLRECSRRMV SLHQKAATDK LTGVRRKYSS SKFGYIATKY EAAAAHFLLV
401: SDSPKL

Best Arabidopsis Sequence Match ( AT4G35620.1 )
(BLAST)

001: MVNPEENNRN LVVKPITEIL QDDDKRSRKF GVEMKRQNRR ALGVINHNLV GAKAYPCVVN KRRGLSQRKQ ESCDKKKLDS LHPSISRSQE ETKKLKPSGN
101: EFGDCIFIDE EEEKNEEVTL DQPMPMSLEE PYIEFDPMEE EVEMEDMEEE QEEPVLDIDE YDANNSLAAV EYVQDLYDFY RKTERFSCVP LDYMAQQFDI
201: SDKMRAILID WLIEVHDKFE LMNETLFLTV NLIDRFLSKQ AVARKKLQLV GLVALLLACK YEEVSVPIVE DLVVISDKAY TRTDVLEMEK IMLSTLQFNM
301: SLPTQYPFLK RFLKAAQSDK KLEILASFLI ELALVDYEMV RYPPSLLAAT AVYTAQCTIH GFSEWNSTCE FHCHYSENQL LECCRRMVRL HQKAGTDKLT
401: GVHRKYSSSK FGYIATKYEA AHFLVSDSH

Arabidopsis Description

CYCB2-2Cyclin-B2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q39070]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.