CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70711
CDX72169
CDX78706
CDX87588
CDX88294
CDX96319
CDY03686
CDY03687
CDY04139
CDY06213
CDY16358
CDY17426
CDY27241
CDY37936
CDY37939
CDY65406
CDY66787

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11300.1	CDX96319	AT1G71380.1	20706207
AT5G11300.1	CDY03686	AT1G71380.1	20706207
AT5G11300.1	CDY03687	AT1G71380.1	20706207
AT5G11300.1	CDY37936	AT1G71380.1	20706207
AT5G11300.1	CDY37939	AT1G71380.1	20706207
AT5G11300.1	CDY66787	AT1G71380.1	20706207
AT5G11300.1	CDX87588	AT1G76540.1	12857813
AT5G11300.1	CDX88294	AT1G76540.1	12857813
AT5G11300.1	CDX70711	AT3G11270.1	20706207
AT5G11300.1	CDX78706	AT3G11270.1	20706207
AT5G11300.1	CDY04139	AT3G11270.1	20706207
AT5G11300.1	CDY06213	AT3G11270.1	20706207
AT5G11300.1	CDY17426	AT3G11270.1	20706207
AT5G11300.1	CDX72169	AT3G56150.1	20706207
AT5G11300.1	CDY16358	AT3G56150.1	20706207
AT5G11300.1	CDY27241	AT3G56150.1	20706207
AT5G11300.1	CDY65406	AT3G56150.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008973.1-P	Field mustard	nucleus, plastid	99.54	99.54
CDX97090	Canola	nucleus	94.51	94.72
AT5G11300.1	Thale cress	plastid	82.15	82.34
CDX87087	Canola	plastid	61.33	64.27
VIT_04s0008g04260.t01	Wine grape	nucleus, plastid	47.83	52.12
CDY61993	Canola	nucleus	43.94	50.93
CDY48212	Canola	nucleus	43.02	49.87
CDY53304	Canola	plastid	46.0	49.14
KRH52524	Soybean	nucleus	52.17	48.61
KRH16044	Soybean	nucleus	51.26	48.59
CDX81722	Canola	nucleus, plastid	44.62	48.39
CDY06752	Canola	nucleus	30.89	47.37
CDY66415	Canola	nucleus	46.68	47.0
KRH05060	Soybean	nucleus	48.97	46.62
CDY36574	Canola	mitochondrion, nucleus	46.45	46.56
KRH61850	Soybean	nucleus	51.95	46.52
CDX96836	Canola	nucleus, plastid	46.0	45.68
CDX79389	Canola	plastid	44.85	45.27
Solyc06g065680.2.1	Tomato	nucleus, plastid	48.97	45.05
CDX67944	Canola	plastid	44.39	44.91
CDY38664	Canola	nucleus, plastid	46.45	44.62
CDY37592	Canola	mitochondrion, plastid	46.45	44.42
CDY39984	Canola	plastid	45.31	44.2
CDY22369	Canola	nucleus	34.32	42.73
CDX87305	Canola	plastid	44.62	42.21
PGSC0003DMT400067117	Potato	plastid	47.83	42.05
CDY17091	Canola	nucleus	34.32	41.9
CDY17037	Canola	nucleus, plastid	34.78	41.76
CDY47595	Canola	nucleus, plastid	35.01	41.24
CDY62408	Canola	nucleus, plasma membrane, plastid	19.45	40.28
CDY41784	Canola	plastid	31.12	40.0
CDX88368	Canola	plastid	34.78	40.0
CDX87520	Canola	nucleus	34.78	39.38
CDY23653	Canola	nucleus	32.04	39.22
CDY31481	Canola	nucleus	19.45	39.17
CDX85466	Canola	plastid	37.3	38.63
CDY02719	Canola	plastid	37.3	38.0
CDY47596	Canola	nucleus	31.12	37.47
CDY66770	Canola	nucleus	30.89	37.29
CDY17039	Canola	nucleus	30.89	37.19
CDY06757	Canola	nucleus, plastid	30.66	36.91
CDX92090	Canola	mitochondrion, nucleus	29.52	36.13
CDY65994	Canola	plastid	36.61	36.12
CDY25649	Canola	plastid	35.93	35.93
CDY26816	Canola	nucleus	27.69	29.73
CDY29184	Canola	nucleus	28.38	29.59
CDX72551	Canola	nucleus	27.0	29.43
CDY07838	Canola	nucleus	28.15	29.43
CDY30357	Canola	nucleus	27.46	29.34
CDY67210	Canola	nucleus	27.0	29.06
CDY62475	Canola	nucleus	23.34	29.06
CDX96631	Canola	nucleus	27.23	29.02
CDX85942	Canola	nucleus	27.0	28.92
CDY29520	Canola	nucleus	27.0	28.78
CDY69551	Canola	nucleus	23.34	28.73
CDY33634	Canola	nucleus	26.77	28.68
CDX88261	Canola	nucleus	27.23	27.67
CDX87612	Canola	nucleus	27.23	27.61
CDY19803	Canola	golgi, nucleus, plasma membrane, plastid	61.56	27.2
CDX68105	Canola	nucleus	24.49	27.09
CDX69311	Canola	nucleus	25.63	26.73
CDX75659	Canola	nucleus	25.4	25.93
CDY11354	Canola	plastid	24.71	24.94
CDX80988	Canola	plastid	24.26	24.77
CDY33338	Canola	nucleus	24.71	18.49
CDY35083	Canola	cytosol, endoplasmic reticulum, nucleus	24.26	17.41
CDX96819	Canola	nucleus	25.17	17.05
CDX83953	Canola	nucleus	25.4	16.95
CDY14091	Canola	plastid	24.49	16.31
CDY04980	Canola	nucleus	24.03	14.62

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.1	GO:A0A078C3Z7	EnsemblPlants:CDX69768	ProteinID:CDX69768	ProteinID:CDX69768.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00135813001	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF212	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EE0970	:	:	:	:	:

Description

BnaA10g21170D

Coordinates

chrLK031790:+:1775109..1778339

Molecular Weight (calculated)

49095.8 Da

IEP (calculated)

5.779

GRAVY (calculated)

-0.316

Length

437 amino acids

Sequence
(BLAST)

001: MDCSSSMHPN ANKENVSTSH VEGGFGRITR SRAKKALGGG GVSIPPTKPS FKQQKKRSVL QDVSNTAAGH IYSDLLKGGN IKVTRKSLKQ CKKAAKGGAD
101: VAMEILDDMH TEKSKLAEDL SKIRMAESLN ASLSISKDEE ITEQQEDGSG AMDFCQVVDI DTNDKDPQCC SLYAADIYDN INVAELQPRP LANYMELVQR
201: DIDPSMRRIL IDWLVEVSED YNLVPDTLYL TVNLIDRFLS NSCIERHRLQ LLGATCMLIA SKYEELCAPP VEEFCDITAN TYTRPEVLSM EIQVLNFVQF
301: KLSVPTTKTF LRRFLRAAQA SYKSPLIEME FLANYLAELT LMEYNFLRFL PSLVAASAVF LARWTLDQTE DPWNPTLQHY TRYEVDELKT AVLAMEELQL
401: NTSGCTLTTT REKYNQPKFK SVAKMTSPKR VSPLFSG

Best Arabidopsis Sequence Match ( AT5G11300.1 )
(BLAST)

001: MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS
101: AMDILVDMHT EKSKLAEDLS KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVEDPQCCS LYAADIYDNI HVAELQQRPL ANYMELVQRD
201: IDPDMRKILI DWLVEVSDDY KLVPDTLYLT VNLIDRFLSN SYIERQRLQL LGVSCMLIAS KYEELSAPGV EEFCFITANT YTRPEVLSME IQILNFVHFR
301: LSVPTTKTFL RRFIKAAQAS YKVPFIELEY LANYLAELTL VEYSFLRFLP SLIAASAVFL ARWTLDQTDH PWNPTLQHYT RYEVAELKNT VLAMEDLQLN
401: TSGCTLAATR EKYNQPKFKS VAKLTSPKRV TSLFSR

Arabidopsis Description

CYCA2-2Cyclin-A2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q147G5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.