Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16330.1 | CDX87155 | AT5G23810.1 | 20706207 |
| AT1G16330.1 | CDY16869 | AT5G23810.1 | 20706207 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026065.1-P | Field mustard | nucleus | 78.16 | 94.07 |
| CDY33338 | Canola | nucleus | 86.37 | 90.07 |
| CDX96819 | Canola | nucleus | 79.97 | 75.5 |
| CDX83953 | Canola | nucleus | 79.64 | 74.05 |
| AT1G16330.1 | Thale cress | nucleus | 76.35 | 71.76 |
| CDY31481 | Canola | nucleus | 16.26 | 45.62 |
| VIT_19s0085g00690.t01 | Wine grape | nucleus | 42.04 | 42.38 |
| KRH44849 | Soybean | nucleus | 44.5 | 36.57 |
| CDX96631 | Canola | nucleus | 23.97 | 35.61 |
| CDY33634 | Canola | nucleus | 23.81 | 35.54 |
| CDY29520 | Canola | nucleus | 23.81 | 35.37 |
| CDX72551 | Canola | nucleus | 22.82 | 34.66 |
| CDY67210 | Canola | nucleus | 22.99 | 34.48 |
| CDY26816 | Canola | nucleus | 22.99 | 34.4 |
| CDY62475 | Canola | nucleus | 19.7 | 34.19 |
| CDY69551 | Canola | nucleus | 19.87 | 34.08 |
| CDY30357 | Canola | nucleus | 22.82 | 33.99 |
| CDX85942 | Canola | nucleus | 22.66 | 33.82 |
| CDX88261 | Canola | nucleus | 22.66 | 32.09 |
| CDX87612 | Canola | nucleus | 22.66 | 32.02 |
| CDY11354 | Canola | plastid | 22.66 | 31.87 |
| CDX68105 | Canola | nucleus | 20.53 | 31.65 |
| CDY29184 | Canola | nucleus | 21.67 | 31.5 |
| CDY07838 | Canola | nucleus | 21.51 | 31.34 |
| Solyc07g066660.2.1 | Tomato | nucleus | 37.93 | 31.26 |
| CDX80988 | Canola | plastid | 21.67 | 30.84 |
| CDX69311 | Canola | nucleus | 21.18 | 30.79 |
| CDY06752 | Canola | nucleus | 14.29 | 30.53 |
| CDX75659 | Canola | nucleus | 21.35 | 30.37 |
| CDY66770 | Canola | nucleus | 17.41 | 29.28 |
| CDY06757 | Canola | nucleus, plastid | 17.24 | 28.93 |
| CDY48212 | Canola | nucleus | 17.41 | 28.12 |
| CDY23653 | Canola | nucleus | 16.42 | 28.01 |
| CDY61993 | Canola | nucleus | 17.24 | 27.85 |
| CDY22369 | Canola | nucleus | 15.93 | 27.64 |
| CDY47596 | Canola | nucleus | 16.42 | 27.55 |
| CDY17091 | Canola | nucleus | 16.09 | 27.37 |
| CDY17039 | Canola | nucleus | 16.26 | 27.27 |
| CDY41784 | Canola | plastid | 15.11 | 27.06 |
| CDX88368 | Canola | plastid | 16.58 | 26.58 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 9.2 | 26.54 |
| CDX79389 | Canola | plastid | 18.55 | 26.1 |
| CDX67944 | Canola | plastid | 18.39 | 25.93 |
| CDY47595 | Canola | nucleus, plastid | 15.76 | 25.88 |
| CDY17037 | Canola | nucleus, plastid | 15.44 | 25.82 |
| CDX87520 | Canola | nucleus | 16.26 | 25.65 |
| CDX92090 | Canola | mitochondrion, nucleus | 14.78 | 25.21 |
| CDX81722 | Canola | nucleus, plastid | 16.58 | 25.06 |
| CDY38664 | Canola | nucleus, plastid | 18.72 | 25.05 |
| CDY37592 | Canola | mitochondrion, plastid | 18.72 | 24.95 |
| CDX87087 | Canola | plastid | 17.08 | 24.94 |
| CDY53304 | Canola | plastid | 16.75 | 24.94 |
| CDX85466 | Canola | plastid | 17.08 | 24.64 |
| CDX96836 | Canola | nucleus, plastid | 17.73 | 24.55 |
| CDX97090 | Canola | nucleus | 17.57 | 24.54 |
| CDY39984 | Canola | plastid | 17.9 | 24.33 |
| CDX69768 | Canola | nucleus, plastid | 17.41 | 24.26 |
| CDY02719 | Canola | plastid | 17.08 | 24.24 |
| CDY66415 | Canola | nucleus | 17.24 | 24.19 |
| CDY65994 | Canola | plastid | 17.57 | 24.15 |
| CDY36574 | Canola | mitochondrion, nucleus | 17.08 | 23.85 |
| CDX87305 | Canola | plastid | 18.06 | 23.81 |
| CDY25649 | Canola | plastid | 17.08 | 23.8 |
| CDY14091 | Canola | plastid | 22.66 | 21.04 |
| CDY04980 | Canola | nucleus | 22.5 | 19.08 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 17.41 | 10.72 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078HE50 | UniProt:A0A078HE50 | EnsemblPlants:CDY35083 | ProteinID:CDY35083 |
| ProteinID:CDY35083.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00057954001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF222 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EE43FE | SEG:seg | : | : | : |
Description
BnaA06g10930DBnaA06g10930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE50]
Coordinates
chrLK032346:-:126161..131428
Molecular Weight (calculated)
68347.5 Da
IEP (calculated)
10.393
GRAVY (calculated)
-0.446
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRSSDCSC FRKVTIEITI VLVILIEIRA PRLGKDDTLG NRAWTRSFKV YYDTQKTDPA CKVGVAHKTR ILLRRKSVTI SSGATSNTNN MKKGTSRITG
101: QNKSSNENSE KYTQVTRKAL ADLSNVGGNT LRPALSGSST MKWNGVKCSN PQRKLPALKR ISLTDKNTKK DNVSSLDSKQ LGQGPASKVS NKALPQLSSA
201: RSFTRKIRTS VGSLPSDRTN QSKNTVRIAR KSIKIQTTVK TSLQKRSPLK NPPVGRSKSQ SILSVPSPEE AASALSIPEQ VETEGLKEDT QGESSSNAKT
301: DSATKVLNVS ARPKSKRRKS FTSLLVSGSK KNDETAQQEK LPNIDDESNQ LEVAEYVDDI YQFYWTAEAL NPALGYYLST QTKVSPITRG ILINWLIEVH
401: SKFDLMHETL YLTMNLLDRY LSQVPVQKNE MQLIGLTALL LASKYEDYWH PRIKDLISIS AETYTREQIL GMERIMLKQL KFRLNEATPY VFMLRFLKAA
501: QSNKKLQQLS FYLIELCLVE YEALKFKSSL LCASAIYVAR CTLHMTPVWT ALLNSHTHYN VSQMKDCSDM ILNFHKAAKT GKLRVTYDKY MKSELSNVAV
601: LKPLDKLPL
101: QNKSSNENSE KYTQVTRKAL ADLSNVGGNT LRPALSGSST MKWNGVKCSN PQRKLPALKR ISLTDKNTKK DNVSSLDSKQ LGQGPASKVS NKALPQLSSA
201: RSFTRKIRTS VGSLPSDRTN QSKNTVRIAR KSIKIQTTVK TSLQKRSPLK NPPVGRSKSQ SILSVPSPEE AASALSIPEQ VETEGLKEDT QGESSSNAKT
301: DSATKVLNVS ARPKSKRRKS FTSLLVSGSK KNDETAQQEK LPNIDDESNQ LEVAEYVDDI YQFYWTAEAL NPALGYYLST QTKVSPITRG ILINWLIEVH
401: SKFDLMHETL YLTMNLLDRY LSQVPVQKNE MQLIGLTALL LASKYEDYWH PRIKDLISIS AETYTREQIL GMERIMLKQL KFRLNEATPY VFMLRFLKAA
501: QSNKKLQQLS FYLIELCLVE YEALKFKSSL LCASAIYVAR CTLHMTPVWT ALLNSHTHYN VSQMKDCSDM ILNFHKAAKT GKLRVTYDKY MKSELSNVAV
601: LKPLDKLPL
001: MAFAKAPRLS RDDILGNRVS TRSFKIFSDN QKTDPASTIG TSQKKTRIPL RRKSVTISNG LGATSNTNNM KKENSRITGK GKSSIENWEE YTKVTRKALA
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
101: DLSNLGGNTL RIPTLCGSST MKWKGVKMAN PKRVSVGPTR ANNISVKKST KENVSKRTTE LGNNNLYKTG QKFIKNKTLS LGSTAGGTRK SLPTLKRTSL
201: TDKSLKKFNV SGLNSKQLGQ GLASKASNQA VPQLSSAGTY TWKTRTSVGS IQSDGNKQSK NNVRFVRKSI KIQTTVKTSL QNRSSLKKPP VGRSKSRSIS
301: SIPSSAVAST LSLPEKVETK CLEEDTQGES SSSGNKDPTT KVLDVTAKPK SKRRKSFTSL LVNGSKFDEK NGETTEPEKL PSIDDESNQL EVAEYVDDIY
401: QFYWTAEALN PALGHYLSAH AEVSPVTRGI LINWLIEVHF KFDLMHETLY LTMDLLDRYL SQVPIHKNEM QLIGLTALLL ASKYEDYWHP RIKDLISISA
501: ESYTREQILG MERSMLKQLK FRLNAPTPYV FMLRFLKAAQ SNKKLEQLAF YLIELCLVEY EALKYKPSLL CASAIYVARC TLHMTPVWTS LLNNHTHYNV
601: SQMKDCSDMI LRFHKAAKTG NLRVTYEKYI NPDRSNVAVL KPLDKLPL
Arabidopsis Description
CYCB3;1CYCB3 [Source:UniProtKB/TrEMBL;Acc:A0A178W969]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.