Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17620.1 | CDX87588 | AT1G76540.1 | 12857813 |
| AT2G17620.1 | CDX88294 | AT1G76540.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30357 | Canola | nucleus | 94.35 | 93.89 |
| CDY07838 | Canola | nucleus | 83.78 | 81.58 |
| CDY29184 | Canola | nucleus | 83.29 | 80.91 |
| AT2G17620.1 | Thale cress | nucleus | 85.01 | 80.65 |
| CDX72551 | Canola | nucleus | 72.97 | 74.06 |
| CDY67210 | Canola | nucleus | 72.48 | 72.66 |
| CDY31481 | Canola | nucleus | 35.38 | 66.36 |
| KRH28901 | Soybean | nucleus | 61.18 | 57.51 |
| KRH76553 | Soybean | nucleus | 60.93 | 57.41 |
| PGSC0003DMT400093973 | Potato | nucleus | 44.23 | 54.55 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 28.99 | 54.38 |
| Solyc02g061650.1.1 | Tomato | nucleus | 46.68 | 54.13 |
| CDX85942 | Canola | nucleus | 53.81 | 53.68 |
| CDX68105 | Canola | nucleus | 51.11 | 52.66 |
| CDY33634 | Canola | nucleus | 52.58 | 52.45 |
| CDX96631 | Canola | nucleus | 52.83 | 52.44 |
| CDX88261 | Canola | nucleus | 54.79 | 51.86 |
| CDX87612 | Canola | nucleus | 54.55 | 51.51 |
| CDY29520 | Canola | nucleus | 51.84 | 51.46 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 51.6 | 50.0 |
| KXG20945 | Sorghum | nucleus | 51.6 | 49.53 |
| GSMUA_Achr11P... | Banana | nucleus | 49.63 | 49.51 |
| Os06t0726800-01 | Rice | nucleus | 50.86 | 49.4 |
| Zm00001d036360_P002 | Maize | nucleus | 51.11 | 49.06 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 33.42 | 48.92 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 49.88 | 48.45 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 48.4 | 48.17 |
| Os04t0563700-01 | Rice | mitochondrion | 49.63 | 48.1 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 49.39 | 47.97 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 47.67 | 47.9 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 49.39 | 47.86 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 48.89 | 47.49 |
| Zm00001d026129_P001 | Maize | nucleus | 49.63 | 47.42 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 49.39 | 47.41 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 48.4 | 46.79 |
| EES12664 | Sorghum | nucleus | 49.63 | 46.76 |
| Zm00001d002662_P010 | Maize | nucleus | 48.16 | 43.08 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 47.42 | 40.98 |
| CDY62475 | Canola | nucleus | 34.15 | 39.6 |
| CDY69551 | Canola | nucleus | 34.4 | 39.44 |
| CDY11354 | Canola | plastid | 38.33 | 36.03 |
| CDX80988 | Canola | plastid | 37.84 | 35.98 |
| CDY06752 | Canola | nucleus | 24.82 | 35.44 |
| CDX69311 | Canola | nucleus | 35.38 | 34.37 |
| CDX75659 | Canola | nucleus | 35.87 | 34.11 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 52.58 | 32.04 |
| CDY17039 | Canola | nucleus | 28.26 | 31.68 |
| CDY47596 | Canola | nucleus | 28.26 | 31.68 |
| CDY17091 | Canola | nucleus | 27.76 | 31.56 |
| CDY06757 | Canola | nucleus, plastid | 28.01 | 31.41 |
| CDY23653 | Canola | nucleus | 27.52 | 31.37 |
| CDY66770 | Canola | nucleus | 27.76 | 31.22 |
| CDX88368 | Canola | plastid | 28.99 | 31.05 |
| CDY17037 | Canola | nucleus, plastid | 27.76 | 31.04 |
| CDY22369 | Canola | nucleus | 26.54 | 30.77 |
| CDY47595 | Canola | nucleus, plastid | 27.76 | 30.46 |
| CDX87520 | Canola | nucleus | 28.75 | 30.31 |
| CDY41784 | Canola | plastid | 25.31 | 30.29 |
| CDY62408 | Canola | nucleus, plasma membrane, plastid | 15.48 | 29.86 |
| CDY53304 | Canola | plastid | 29.24 | 29.1 |
| CDY61993 | Canola | nucleus | 26.54 | 28.65 |
| CDY48212 | Canola | nucleus | 26.29 | 28.38 |
| CDX97090 | Canola | nucleus | 29.98 | 27.98 |
| CDX81722 | Canola | nucleus, plastid | 27.52 | 27.79 |
| CDX85466 | Canola | plastid | 28.75 | 27.73 |
| CDX69768 | Canola | nucleus, plastid | 29.73 | 27.69 |
| CDY02719 | Canola | plastid | 28.75 | 27.27 |
| CDX92090 | Canola | mitochondrion, nucleus | 23.59 | 26.89 |
| CDY36574 | Canola | mitochondrion, nucleus | 28.75 | 26.83 |
| CDX87087 | Canola | plastid | 27.27 | 26.62 |
| CDX96836 | Canola | nucleus, plastid | 28.5 | 26.36 |
| CDX79389 | Canola | plastid | 28.01 | 26.33 |
| CDX67944 | Canola | plastid | 27.76 | 26.16 |
| CDY66415 | Canola | nucleus | 27.76 | 26.04 |
| CDY65994 | Canola | plastid | 27.52 | 25.28 |
| CDY38664 | Canola | nucleus, plastid | 28.26 | 25.27 |
| CDY39984 | Canola | plastid | 27.52 | 25.0 |
| CDY25649 | Canola | plastid | 26.78 | 24.94 |
| CDY37592 | Canola | mitochondrion, plastid | 27.52 | 24.51 |
| CDY33338 | Canola | nucleus | 35.14 | 24.49 |
| CDX87305 | Canola | plastid | 27.27 | 24.03 |
| CDY14091 | Canola | plastid | 38.57 | 23.93 |
| CDY35083 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.4 | 22.99 |
| CDX96819 | Canola | nucleus | 34.4 | 21.71 |
| CDY04980 | Canola | nucleus | 38.08 | 21.59 |
| CDX83953 | Canola | nucleus | 34.64 | 21.53 |
| CDY19803 | Canola | golgi, nucleus, plasma membrane, plastid | 27.52 | 11.32 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | GO:A0A078GN97 | UniProt:A0A078GN97 | EnsemblPlants:CDY26816 | ProteinID:CDY26816 |
| ProteinID:CDY26816.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00035763001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF336 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EDD4D1 | SEG:seg | : | : | : |
Description
BnaC09g09430DBnaC09g09430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN97]
Coordinates
chrLK032194:+:420106..422022
Molecular Weight (calculated)
46461.1 Da
IEP (calculated)
4.985
GRAVY (calculated)
-0.226
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTSRENNIV VEPTTTSILQ DETTSRKFGQ EVKREKRRVL GVINQNVVGA RGVVNKRGNL SKSRVEEPLY HQEEAKKLKP SSVPSANDFG DCIFIDDEEE
101: EAALDHPMPM SLGKPYTEAD PMEEVEMEDV TVEEPILDID LSDAKNSLAA VEYVQDLYSF YRTMERCSCV PADYMMQQMD LNEKMRAILI DWLIEVHDKF
201: DLMKETLFLT VNLIDRFLSK KAVMRKKLQL VGLVALLLAC KYEEVSVPVV EDLVLISDKA YARNDVLDME KTMLSTLQFN VSLPTQYPFL KRFLKAAQAD
301: KKCEMLASFL IELALVEYEM LRFQPSLLAA TAVYTAQCTV DGYRQWSSTC EFHSHYSEDQ LMECCRKMVS LHQRAATGKL TGVYRKYNTS KFGYIAKCEA
401: AHFLLSA
101: EAALDHPMPM SLGKPYTEAD PMEEVEMEDV TVEEPILDID LSDAKNSLAA VEYVQDLYSF YRTMERCSCV PADYMMQQMD LNEKMRAILI DWLIEVHDKF
201: DLMKETLFLT VNLIDRFLSK KAVMRKKLQL VGLVALLLAC KYEEVSVPVV EDLVLISDKA YARNDVLDME KTMLSTLQFN VSLPTQYPFL KRFLKAAQAD
301: KKCEMLASFL IELALVEYEM LRFQPSLLAA TAVYTAQCTV DGYRQWSSTC EFHSHYSEDQ LMECCRKMVS LHQRAATGKL TGVYRKYNTS KFGYIAKCEA
401: AHFLLSA
001: MVNSCENKIF VKPTSTTILQ DETRSRKFGQ EMKREKRRVL RVINQNLAGA RVYPCVVNKR GSLLSNKQEE EEGCQKKKFD SLRPSVTRSG VEEETNKKLK
101: PSVPSANDFG DCIFIDEEEA TLDLPMPMSL EKPYIEADPM EEVEMEDVTV EEPIVDIDVL DSKNSLAAVE YVQDLYAFYR TMERFSCVPV DYMMQQIDLN
201: EKMRAILIDW LIEVHDKFDL INETLFLTVN LIDRFLSKQN VMRKKLQLVG LVALLLACKY EEVSVPVVED LVLISDKAYT RNDVLEMEKT MLSTLQFNIS
301: LPTQYPFLKR FLKAAQADKK CEVLASFLIE LALVEYEMLR FPPSLLAATS VYTAQCTLDG SRKWNSTCEF HCHYSEDQLM ECSRKLVSLH QRAATGNLTG
401: VYRKYSTSKF GYIAKCEAAH FLVSESHHS
101: PSVPSANDFG DCIFIDEEEA TLDLPMPMSL EKPYIEADPM EEVEMEDVTV EEPIVDIDVL DSKNSLAAVE YVQDLYAFYR TMERFSCVPV DYMMQQIDLN
201: EKMRAILIDW LIEVHDKFDL INETLFLTVN LIDRFLSKQN VMRKKLQLVG LVALLLACKY EEVSVPVVED LVLISDKAYT RNDVLEMEKT MLSTLQFNIS
301: LPTQYPFLKR FLKAAQADKK CEVLASFLIE LALVEYEMLR FPPSLLAATS VYTAQCTLDG SRKWNSTCEF HCHYSEDQLM ECSRKLVSLH QRAATGNLTG
401: VYRKYSTSKF GYIAKCEAAH FLVSESHHS
Arabidopsis Description
CYCB2-1Cyclin-B2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q39068]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.