Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG20945 | Sorghum | nucleus | 93.16 | 93.16 |
| Os06t0726800-01 | Rice | nucleus | 82.08 | 83.05 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 77.36 | 78.28 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 76.65 | 77.57 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 76.42 | 77.33 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 75.71 | 76.43 |
| CDY31481 | Canola | nucleus | 35.14 | 68.66 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 42.69 | 65.11 |
| PGSC0003DMT400075380 | Potato | nucleus | 36.32 | 64.98 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 33.25 | 64.98 |
| GSMUA_Achr11P... | Banana | nucleus | 57.08 | 59.31 |
| Solyc04g082430.2.1 | Tomato | nucleus | 54.95 | 59.29 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 59.2 | 59.2 |
| CDY33634 | Canola | nucleus | 56.37 | 58.58 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 60.38 | 58.05 |
| Bra016460.1-P | Field mustard | nucleus | 56.13 | 58.05 |
| CDX96631 | Canola | nucleus | 55.9 | 57.8 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 56.6 | 57.14 |
| Bra003727.1-P | Field mustard | nucleus | 51.42 | 56.92 |
| PGSC0003DMT400025854 | Potato | nucleus | 58.96 | 56.69 |
| Bra015762.1-P | Field mustard | nucleus | 57.31 | 56.38 |
| CDX87612 | Canola | nucleus | 57.08 | 56.15 |
| CDX85942 | Canola | nucleus | 54.01 | 56.13 |
| CDX88261 | Canola | nucleus | 56.6 | 55.81 |
| Bra025831.1-P | Field mustard | nucleus | 53.54 | 55.37 |
| CDY29520 | Canola | nucleus | 53.3 | 55.12 |
| KRH76553 | Soybean | nucleus | 56.13 | 55.09 |
| KRH28901 | Soybean | nucleus | 56.13 | 54.97 |
| CDX68105 | Canola | nucleus | 50.71 | 54.43 |
| AT1G20610.1 | Thale cress | nucleus | 54.95 | 54.31 |
| PGSC0003DMT400048062 | Potato | nucleus | 54.48 | 53.6 |
| VIT_03s0038g02800.t01 | Wine grape | nucleus, plastid | 53.54 | 53.54 |
| Solyc03g032190.2.1 | Tomato | nucleus | 54.25 | 53.36 |
| AT1G76310.3 | Thale cress | nucleus | 57.08 | 52.72 |
| KRH60628 | Soybean | nucleus | 50.0 | 52.35 |
| Zm00001d026129_P001 | Maize | nucleus | 52.12 | 51.88 |
| Solyc02g061650.1.1 | Tomato | nucleus | 42.92 | 51.85 |
| KRH51329 | Soybean | nucleus, plastid | 50.71 | 51.81 |
| Solyc12g094600.1.1 | Tomato | nucleus | 51.89 | 51.76 |
| PGSC0003DMT400003868 | Potato | nucleus | 52.83 | 51.73 |
| CDX72551 | Canola | nucleus | 48.58 | 51.37 |
| PGSC0003DMT400093973 | Potato | nucleus | 39.86 | 51.21 |
| Solyc02g082820.2.1 | Tomato | nucleus | 52.36 | 51.15 |
| CDY26816 | Canola | nucleus | 49.06 | 51.11 |
| CDY30357 | Canola | nucleus | 49.29 | 51.1 |
| Bra037265.1-P | Field mustard | nucleus | 49.06 | 50.86 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 31.6 | 50.57 |
| CDY67210 | Canola | nucleus | 48.11 | 50.25 |
| Bra017726.1-P | Field mustard | nucleus | 48.11 | 50.25 |
| Bra024504.1-P | Field mustard | nucleus | 49.06 | 49.64 |
| CDY29184 | Canola | nucleus | 49.06 | 49.64 |
| CDY07838 | Canola | nucleus | 48.82 | 49.52 |
| AT4G35620.1 | Thale cress | nucleus | 50.0 | 49.42 |
| Zm00001d002662_P010 | Maize | nucleus | 52.59 | 49.01 |
| AT2G17620.1 | Thale cress | nucleus | 49.53 | 48.95 |
| Zm00001d019469_P001 | Maize | extracellular | 16.27 | 48.25 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 57.78 | 36.68 |
| Zm00001d012560_P002 | Maize | nucleus, plastid | 35.38 | 33.41 |
| Zm00001d043164_P002 | Maize | nucleus | 35.14 | 30.79 |
| Zm00001d008221_P001 | Maize | nucleus | 34.2 | 30.27 |
| Zm00001d010656_P001 | Maize | nucleus | 31.84 | 30.27 |
| Zm00001d032128_P001 | Maize | cytosol | 10.61 | 28.48 |
| Zm00001d033365_P002 | Maize | nucleus | 24.76 | 28.23 |
| Zm00001d013744_P001 | Maize | nucleus | 23.11 | 27.45 |
| Zm00001d020033_P001 | Maize | nucleus | 33.49 | 26.1 |
| Zm00001d020996_P001 | Maize | nucleus | 32.55 | 25.37 |
| Zm00001d023732_P002 | Maize | mitochondrion, nucleus, plastid | 27.59 | 24.12 |
| Zm00001d014756_P006 | Maize | nucleus, plastid | 29.48 | 23.99 |
| Zm00001d021353_P002 | Maize | mitochondrion, nucleus | 11.08 | 23.5 |
| Zm00001d030849_P001 | Maize | nucleus | 23.35 | 23.4 |
| Zm00001d040381_P001 | Maize | plastid | 29.01 | 23.08 |
| Zm00001d041334_P001 | Maize | nucleus, plastid | 23.11 | 22.43 |
| Zm00001d010404_P001 | Maize | nucleus | 24.76 | 21.65 |
| Zm00001d009011_P001 | Maize | nucleus, plastid | 25.47 | 21.18 |
| Zm00001d048127_P001 | Maize | plastid | 20.99 | 18.58 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.2 | EntrezGene:542305 | ProteinID:AQK80844.1 | EMBL:BT087413 | UniProt:C4J9B6 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF338 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0001A4C6AA |
| EnsemblPlantsGene:Zm00001d036360 | EnsemblPlants:Zm00001d036360_P002 | EnsemblPlants:Zm00001d036360_T002 | SEG:seg | : | : |
Description
cyclin3Cyclin-B2-4
Coordinates
chr6:+:85712835..85716668
Molecular Weight (calculated)
47751.6 Da
IEP (calculated)
5.992
GRAVY (calculated)
-0.215
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLRSQNCH QGVAMEGVKF APEKANTNRR ALSDIKNIIG GPHQHLAVSK RALSEKPAAA AAANAKDQAG FVGHRPVTRK FAATLATQPT VALLDPIGSE
101: RLKRNADTAF HTPADMESTK MTDDSPLPMV SEMDEMMSPE LKEIEMEDIE EAAPDIDSGD AGNSLAVADY VDEIYRFYRK TEGASCVPTN YMSSQTDINE
201: KMRGILIDWL IEVHYKLELL EETLFLTVNI IDRFLARENV VRKKLQLAGV TAMLLACKYE EVSVPVVEDL ILICDRAYTR ADILEMERRI VNTLNFNMSV
301: PTPYCFMRRF LKAAQSEKKL ELLSFFMIEL SLVEYEMLQF CPSMLAAAAI YTAQCTINGF KSWNKCCELH TKYSEEHLMV CSRMMVELHQ RAAHGKLTGV
401: HRKYNTSRYS YAAKSEPATF LLDA
101: RLKRNADTAF HTPADMESTK MTDDSPLPMV SEMDEMMSPE LKEIEMEDIE EAAPDIDSGD AGNSLAVADY VDEIYRFYRK TEGASCVPTN YMSSQTDINE
201: KMRGILIDWL IEVHYKLELL EETLFLTVNI IDRFLARENV VRKKLQLAGV TAMLLACKYE EVSVPVVEDL ILICDRAYTR ADILEMERRI VNTLNFNMSV
301: PTPYCFMRRF LKAAQSEKKL ELLSFFMIEL SLVEYEMLQF CPSMLAAAAI YTAQCTINGF KSWNKCCELH TKYSEEHLMV CSRMMVELHQ RAAHGKLTGV
401: HRKYNTSRYS YAAKSEPATF LLDA
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.