Factsheet for PGSC0003DMT400075380

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400002100
PGSC0003DMT400013736
PGSC0003DMT400017831
PGSC0003DMT400021687
PGSC0003DMT400037076
PGSC0003DMT400037077
PGSC0003DMT400038307
PGSC0003DMT400039096
PGSC0003DMT400042160
PGSC0003DMT400045314
PGSC0003DMT400048460
PGSC0003DMT400051207
PGSC0003DMT400074878
PGSC0003DMT400084196

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	PGSC0003DMT400051207	AT4G19210.1	20706207
AT1G20590.1	PGSC0003DMT400037076	AT4G25550.1	20706207
AT1G20590.1	PGSC0003DMT400037077	AT4G25550.1	20706207
AT1G20590.1	PGSC0003DMT400084196	AT4G25550.1	20706207
AT1G20610.1	PGSC0003DMT400013736	AT1G19520.1	20706207
AT1G20610.1	PGSC0003DMT400038307	AT1G19520.1	20706207
AT1G20610.1	PGSC0003DMT400002100	AT1G43700.1	20706207
AT1G20610.1	PGSC0003DMT400045314	AT1G43700.1	20706207
AT1G20610.1	PGSC0003DMT400074878	AT1G43700.1	20706207
AT1G20610.1	PGSC0003DMT400039096	AT1G56290.1	20706207
AT1G20610.1	PGSC0003DMT400021687	AT1G71380.1	20706207
AT1G20610.1	PGSC0003DMT400001218	AT2G27960.1	20706207
AT1G20610.1	PGSC0003DMT400048460	AT2G27960.1	20706207
AT1G20610.1	PGSC0003DMT400042160	AT3G11270.1	20706207
AT1G20610.1	PGSC0003DMT400017831	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31481	Canola	nucleus	62.45	68.2
Solyc12g094600.1.1	Tomato	nucleus	95.78	53.41
GSMUA_Achr5P19270_001	Banana	cytosol	47.68	52.07
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	53.59	47.92
HORVU0Hr1G022770.1	Barley	nucleus, plastid	54.85	46.76
PGSC0003DMT400093973	Potato	nucleus	60.76	43.64
Bra003727.1-P	Field mustard	nucleus	69.62	43.08
PGSC0003DMT400025854	Potato	nucleus	79.32	42.63
GSMUA_Achr11P...	Banana	nucleus	71.73	41.67
VIT_18s0001g14170.t01	Wine grape	nucleus	75.95	40.82
GSMUA_Achr8P13320_001	Banana	nucleus	71.73	40.48
CDX96631	Canola	nucleus	69.62	40.24
Bra016460.1-P	Field mustard	nucleus	69.2	40.0
KRH60628	Soybean	nucleus	68.35	40.0
CDY33634	Canola	nucleus	68.78	39.95
KRH51329	Soybean	nucleus, plastid	69.62	39.76
CDX85942	Canola	nucleus	68.35	39.71
CDY29520	Canola	nucleus	67.51	39.02
TraesCS2A01G404800.1	Wheat	nucleus	66.67	39.01
GSMUA_Achr5P19110_001	Banana	nucleus	69.62	38.92
Bra025831.1-P	Field mustard	nucleus	67.09	38.78
TraesCS2B01G422800.1	Wheat	nucleus	66.67	38.63
PGSC0003DMT400048062	Potato	nucleus	70.04	38.52
AT1G20610.1	Thale cress	nucleus	69.62	38.46
Os04t0563700-01	Rice	mitochondrion	67.09	37.86
Zm00001d026129_P001	Maize	nucleus	67.93	37.79
TraesCS2D01G401700.1	Wheat	nucleus, plastid	67.09	37.77
CDX68105	Canola	nucleus	62.87	37.72
Bra015762.1-P	Field mustard	nucleus	68.35	37.59
Os06t0726800-01	Rice	nucleus	66.24	37.47
CDX88261	Canola	nucleus	67.93	37.44
CDX87612	Canola	nucleus	67.93	37.35
EES12664	Sorghum	nucleus	67.93	37.27
PGSC0003DMT400003868	Potato	nucleus	67.51	36.95
KXG20945	Sorghum	nucleus	65.82	36.79
Zm00001d036360_P002	Maize	nucleus	64.98	36.32
AT1G76310.3	Thale cress	nucleus	69.2	35.73
HORVU7Hr1G121820.6	Barley	nucleus	63.29	35.71
TraesCS7A01G549500.1	Wheat	nucleus	62.87	35.56
Zm00001d002662_P010	Maize	nucleus	67.93	35.38
TraesCS7D01G536000.1	Wheat	nucleus	62.45	35.32
TraesCS7B01G472800.1	Wheat	nucleus	62.45	35.32
HORVU2Hr1G096070.2	Barley	nucleus	66.67	33.55
PGSC0003DMT400058457	Potato	nucleus	46.84	26.55
PGSC0003DMT400018480	Potato	nucleus	45.99	25.65
PGSC0003DMT400030222	Potato	nucleus	37.97	25.42
PGSC0003DMT400030176	Potato	nucleus	37.97	25.28
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	70.46	25.0
PGSC0003DMT400015245	Potato	nucleus	45.57	24.6
PGSC0003DMT400055428	Potato	nucleus	37.55	24.18
PGSC0003DMT400072211	Potato	nucleus	46.84	23.92
PGSC0003DMT400056625	Potato	nucleus	37.97	23.68
PGSC0003DMT400006576	Potato	nucleus	39.66	20.3
PGSC0003DMT400067117	Potato	plastid	40.93	19.52
PGSC0003DMT400015424	Potato	plastid	37.97	19.07

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.2	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1CV22	PFAM:PF00134
PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400029316	PGSC:PGSC0003DMG400029316	EnsemblPlants:PGSC0003DMT400075380	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF350	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000296091E

Description

Cyclin B [Source:PGSC_GENE;Acc:PGSC0003DMG400029316]

Coordinates

chr12:-:57420220..57421530

Molecular Weight (calculated)

27367.9 Da

IEP (calculated)

8.175

GRAVY (calculated)

0.205

Length

237 amino acids

Sequence
(BLAST)

001: MEQQFDINDR MRAILIDWLI EVQYKFELME ETLYLTVNLI DRFLAVQPVV RKKLQLVGVT ALFLACKYEE VSVPVVQDLI LISDKAYNGI EVLEMEKLMI
101: NTLQFKLSVP TTYVFMKRFL KAAQSDKKVE LLSFFMTELC LVEYETLRFP PSMLAAAAIF TAQCTLGVAK EWTKTCEKYS NYTRDQLLEC SKLMVTFHQK
201: AATGRLNAVH RKYSISKYGF VAKLFPPASF LLEASFI

Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)

001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI

Arabidopsis Description

CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.