Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003727.1-P | Field mustard | nucleus | 71.46 | 85.64 |
| CDX88261 | Canola | nucleus | 79.96 | 85.35 |
| Bra015762.1-P | Field mustard | nucleus | 79.74 | 84.92 |
| CDX68105 | Canola | nucleus | 72.98 | 84.81 |
| CDX87612 | Canola | nucleus | 79.3 | 84.45 |
| CDX85942 | Canola | nucleus | 74.73 | 84.07 |
| AT1G20610.1 | Thale cress | nucleus | 70.81 | 75.76 |
| PGSC0003DMT400075380 | Potato | nucleus | 35.73 | 69.2 |
| Solyc04g082430.2.1 | Tomato | nucleus | 56.21 | 65.65 |
| PGSC0003DMT400025854 | Potato | nucleus | 62.09 | 64.63 |
| VIT_18s0001g14170.t01 | Wine grape | nucleus | 61.66 | 64.17 |
| AT1G20590.1 | Thale cress | cytosol, golgi, nucleus, plastid | 36.17 | 62.64 |
| GSMUA_Achr5P19270_001 | Banana | cytosol | 28.76 | 60.83 |
| Solyc12g094600.1.1 | Tomato | nucleus | 55.12 | 59.53 |
| KRH60628 | Soybean | nucleus | 51.85 | 58.77 |
| KRH51329 | Soybean | nucleus, plastid | 52.51 | 58.07 |
| Os06t0726800-01 | Rice | nucleus | 52.72 | 57.76 |
| KXG20945 | Sorghum | nucleus | 52.94 | 57.31 |
| Zm00001d036360_P002 | Maize | nucleus | 52.72 | 57.08 |
| GSMUA_Achr8P13320_001 | Banana | nucleus | 52.07 | 56.9 |
| GSMUA_Achr11P... | Banana | nucleus | 49.89 | 56.13 |
| GSMUA_Achr5P19110_001 | Banana | nucleus | 51.63 | 55.9 |
| TraesCS7B01G472800.1 | Wheat | nucleus | 50.33 | 55.13 |
| TraesCS7D01G536000.1 | Wheat | nucleus | 50.11 | 54.89 |
| HORVU7Hr1G121820.6 | Barley | nucleus | 49.89 | 54.52 |
| TraesCS7A01G549500.1 | Wheat | nucleus | 49.67 | 54.42 |
| Os04t0563700-01 | Rice | mitochondrion | 49.46 | 54.05 |
| TraesCS2A01G404800.1 | Wheat | nucleus | 47.28 | 53.58 |
| TraesCS2B01G422800.1 | Wheat | nucleus | 47.71 | 53.55 |
| AT4G35620.1 | Thale cress | nucleus | 49.02 | 52.45 |
| TraesCS2D01G401700.1 | Wheat | nucleus, plastid | 47.93 | 52.26 |
| Zm00001d026129_P001 | Maize | nucleus | 47.93 | 51.64 |
| HORVU0Hr1G022770.1 | Barley | nucleus, plastid | 30.72 | 50.72 |
| EES12664 | Sorghum | nucleus | 47.71 | 50.69 |
| AT2G17620.1 | Thale cress | nucleus | 47.28 | 50.58 |
| Zm00001d002662_P010 | Maize | nucleus | 48.15 | 48.57 |
| HORVU2Hr1G096070.2 | Barley | nucleus | 47.71 | 46.5 |
| AT3G11520.1 | Thale cress | nucleus | 33.77 | 37.44 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, vacuole | 52.94 | 36.38 |
| AT2G26760.1 | Thale cress | nucleus | 29.41 | 34.88 |
| AT5G06150.1 | Thale cress | nucleus | 32.9 | 33.93 |
| AT4G37490.1 | Thale cress | nucleus | 30.07 | 32.24 |
| AT1G47220.1 | Thale cress | nucleus | 22.66 | 31.8 |
| AT1G47210.2 | Thale cress | nucleus | 24.4 | 30.11 |
| AT5G43080.1 | Thale cress | nucleus | 21.79 | 28.17 |
| AT1G47230.2 | Thale cress | nucleus, plastid | 22.66 | 28.11 |
| AT5G11300.1 | Thale cress | plastid | 25.93 | 27.29 |
| AT1G77390.1 | Thale cress | plastid | 26.14 | 27.15 |
| AT1G44110.1 | Thale cress | plastid | 27.02 | 26.96 |
| AT1G15570.1 | Thale cress | nucleus, plastid | 25.49 | 26.0 |
| AT5G25380.4 | Thale cress | plastid | 25.05 | 25.96 |
| AT1G80370.1 | Thale cress | plastid | 24.84 | 24.73 |
| AT1G16330.1 | Thale cress | nucleus | 31.81 | 22.53 |
| AT1G34460.5 | Thale cress | cytosol | 23.97 | 22.09 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:35.1 | EntrezGene:843964 | UniProt:A0A1P8AWH0 | ProteinID:ANM61004.1 | ArrayExpress:AT1G76310 |
| EnsemblPlantsGene:AT1G76310 | RefSeq:AT1G76310 | TAIR:AT1G76310 | RefSeq:AT1G76310-TAIR-G | EnsemblPlants:AT1G76310.3 | Symbol:CYCB2;4 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | RefSeq:NP_001323249.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF350 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI000848EFA0 | : | : | : | : | : |
Description
CYCB2;4CYCLIN B2;4 [Source:TAIR;Acc:AT1G76310]
Coordinates
chr1:-:28627803..28630546
Molecular Weight (calculated)
52419.1 Da
IEP (calculated)
5.902
GRAVY (calculated)
-0.330
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSDENRHG VIGPMNRQQG GLRGGKVIPT NGQTRRALSN INKNIIGAPV YPCAVKRPFT EKNGICNKKI PPVPVHRPVT RKFAAQLAEN NLQIHKEETK
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMVKSFTK
301: SCPDYNHGCS ALYVDDHYCV LQEKLMANTL QFNFCLPTPY VFMRRFLKAA QSDKKLELLS FFMIELCLVE YEMLQYTPSQ LAASAIYTAQ STLKGYEDWS
401: KTSEFHSGYT EEALLECSRK MVGLHHKAGT GKLTGVHRKY NTSKFGYAAR IEPAGFLLL
101: KPDLISNEAL DRIITDVEEG DFNEPMFVQH TEAMLEEIDK MEGIEMQDSN DIDAEVEESV MDIDSCDKNN PLSVVEYIND IYCFYKKNEC RSCVPPNYME
201: NQHDINERMR GILFDWLIEV HYKFELMEET LYLTINLIDR FLAVHQHIAR KKLQLVGVTA MLLACKYEEV SVPVVDDLIL ISDKAYTRTE ILDMVKSFTK
301: SCPDYNHGCS ALYVDDHYCV LQEKLMANTL QFNFCLPTPY VFMRRFLKAA QSDKKLELLS FFMIELCLVE YEMLQYTPSQ LAASAIYTAQ STLKGYEDWS
401: KTSEFHSGYT EEALLECSRK MVGLHHKAGT GKLTGVHRKY NTSKFGYAAR IEPAGFLLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.