CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89488
KRG90984
KRG91493
KRG94254
KRG94519
KRG97770
KRH01504
KRH05834
KRH06950
KRH08713
KRH15184
KRH20017
KRH25124
KRH28995
KRH30550
KRH31114
KRH35335
KRH35769
KRH41052
KRH45195
KRH54085
KRH56424
KRH57679
KRH62487
KRH63871
KRH70316

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20590.1	KRH28995	AT4G19210.1	20706207
AT1G20590.1	KRG91493	AT4G25550.1	20706207
AT1G20590.1	KRH35335	AT4G25550.1	20706207
AT1G20610.1	KRH05834	AT1G19520.1	20706207
AT1G20610.1	KRH15184	AT1G19520.1	20706207
AT1G20610.1	KRH08713	AT1G43700.1	20706207
AT1G20610.1	KRH70316	AT1G43700.1	20706207
AT1G20610.1	KRG90984	AT1G56290.1	20706207
AT1G20610.1	KRH35769	AT1G56290.1	20706207
AT1G20610.1	KRH56424	AT1G71380.1	20706207
AT1G20610.1	KRH62487	AT1G71380.1	20706207
AT1G20610.1	KRH25124	AT2G27960.1	20706207
AT1G20610.1	KRH30550	AT2G27960.1	20706207
AT1G20610.1	KRG89488	AT3G11270.1	20706207
AT1G20610.1	KRG97770	AT3G11270.1	20706207
AT1G20610.1	KRH31114	AT3G11270.1	20706207
AT1G20610.1	KRH20017	AT5G07300.1	20706207
AT1G20610.1	KRH41052	AT5G07300.1	20706207
AT1G20610.1	KRH54085	AT5G07300.1	20706207
AT1G20610.1	KRH63871	AT5G07300.1	20706207
AT1G20610.1	KRH01504	AT5G13330.1	20706207
AT1G20610.1	KRH45195	AT5G13330.1	20706207
AT1G20610.1	KRG94254	AT5G14170.1	20706207
AT1G20610.1	KRG94519	AT5G14170.1	20706207
AT1G20610.1	KRH06950	AT5G14170.1	20706207
AT1G20610.1	KRH57679	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60628	Soybean	nucleus	92.29	94.57
PGSC0003DMT400075380	Potato	nucleus	39.76	69.62
CDY31481	Canola	nucleus	35.18	67.28
GSMUA_Achr5P19270_001	Banana	cytosol	32.05	61.29
VIT_03s0038g02800.t01	Wine grape	nucleus, plastid	59.76	58.49
Solyc04g082430.2.1	Tomato	nucleus	54.94	58.02
CDX85942	Canola	nucleus	56.87	57.84
Bra003727.1-P	Field mustard	nucleus	53.25	57.7
Bra015762.1-P	Field mustard	nucleus	59.28	57.08
CDX88261	Canola	nucleus	59.04	56.98
CDX87612	Canola	nucleus	59.04	56.84
CDY33634	Canola	nucleus	55.66	56.62
PGSC0003DMT400025854	Potato	nucleus	60.0	56.46
Bra016460.1-P	Field mustard	nucleus	55.66	56.34
CDX96631	Canola	nucleus	55.66	56.34
CDX68105	Canola	nucleus	53.49	56.2
GSMUA_Achr11P...	Banana	nucleus	54.46	55.39
GSMUA_Achr8P13320_001	Banana	nucleus	55.9	55.24
AT1G20610.1	Thale cress	nucleus	56.87	55.01
KRH28901	Soybean	nucleus	57.35	54.97
KRH76553	Soybean	nucleus	57.11	54.86
Solyc12g094600.1.1	Tomato	nucleus	55.42	54.12
Os06t0726800-01	Rice	nucleus	54.46	53.94
GSMUA_Achr5P19110_001	Banana	nucleus	54.94	53.77
Bra025831.1-P	Field mustard	nucleus	52.53	53.17
HORVU0Hr1G022770.1	Barley	nucleus, plastid	35.18	52.52
AT1G76310.3	Thale cress	nucleus	58.07	52.51
TraesCS7D01G536000.1	Wheat	nucleus	52.77	52.27
TraesCS7B01G472800.1	Wheat	nucleus	52.77	52.27
CDY29520	Canola	nucleus	51.57	52.2
HORVU7Hr1G121820.6	Barley	nucleus	52.77	52.14
KXG20945	Sorghum	nucleus	53.25	52.12
TraesCS7A01G549500.1	Wheat	nucleus	52.29	51.79
Os04t0563700-01	Rice	mitochondrion	51.81	51.19
AT1G20590.1	Thale cress	cytosol, golgi, nucleus, plastid	32.53	50.94
Zm00001d036360_P002	Maize	nucleus	51.81	50.71
TraesCS2A01G404800.1	Wheat	nucleus	48.92	50.12
TraesCS2B01G422800.1	Wheat	nucleus	49.4	50.12
TraesCS2D01G401700.1	Wheat	nucleus, plastid	50.12	49.41
Zm00001d026129_P001	Maize	nucleus	48.67	47.42
EES12664	Sorghum	nucleus	48.67	46.76
Zm00001d002662_P010	Maize	nucleus	48.19	43.96
HORVU2Hr1G096070.2	Barley	nucleus	48.67	42.89
KRH66720	Soybean	endoplasmic reticulum, vacuole	19.28	40.2
KRH52056	Soybean	nucleus	19.28	37.91
KRH66715	Soybean	nucleus	33.25	35.2
KRG95055	Soybean	nucleus	38.07	34.73
GSMUA_Achr11P...	Banana	endoplasmic reticulum, vacuole	55.66	34.58
KRH66713	Soybean	nucleus	36.87	33.7
KRH73516	Soybean	nucleus	34.94	32.95
KRH66718	Soybean	plastid	29.4	32.71
KRH14611	Soybean	nucleus	34.46	32.57
KRG95056	Soybean	cytosol	28.92	31.01
KRH61375	Soybean	nucleus	24.1	30.58
KRH61371	Soybean	nucleus	25.3	30.09
KRH15427	Soybean	nucleus, plastid	25.78	29.4
KRH05614	Soybean	nucleus	25.06	28.34
KRH16044	Soybean	nucleus	30.84	27.77
KRH05060	Soybean	nucleus	30.12	27.23
KRH52055	Soybean	nucleus	23.37	27.09
KRH61373	Soybean	nucleus, plastid	24.1	26.67
KRH61850	Soybean	nucleus	31.33	26.64
KRH52524	Soybean	nucleus	29.88	26.44
KRH61369	Soybean	nucleus	20.72	26.3
KRH53279	Soybean	plastid	29.64	25.62
KRH64625	Soybean	plastid	29.16	25.0
KRH44391	Soybean	nucleus	27.95	24.63
KRH47513	Soybean	nucleus	28.19	24.58
KRH16410	Soybean	plastid	29.4	24.21
KRH17986	Soybean	plastid	28.92	23.86
KRH44849	Soybean	nucleus	33.49	18.76

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100812029	MapMan:13.1.1.1.2	EMBL:ACUP02003370	EMBL:BT093647	UniProt:C6T853
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_06G000600	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KRH51329	ProteinID:KRH51329	ProteinID:KRH51329.1
ProteinID:KRH51330.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF336	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0001B15E62	SEG:seg

Description

hypothetical protein

Coordinates

chr6:+:93172..96057

Molecular Weight (calculated)

48075.0 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.312

Length

415 amino acids

Sequence
(BLAST)

001: MEGSKENRVP PLPLIPSSNL QQGGGPRMKR LLHHHHRLPL GNISQNVMPH SHVNKLDLAR KFTPHTVQHH FPQPHPQPQE NKKQNLLAPT PSYQLDCDIV
101: DIDDDDGDGS DDAVPVFVKH TEAMLDEIDK IEEVEMEDVE EEPVLDIDAC DRKDTLAVVE YIDDIYSFYK DIENSSRVSP NYMNSQFDIN ERMRAILIDW
201: LVEVHYKFEL LEETLFLTVN LIDRFLERQA VIRKKLQLVG VTAMLIACKY EEVSVPTVED FILITDKAYT RNEVLDMEKL MMNILQFKLS VPTPYMFMRR
301: FLKAAHSDKK LELLSFFLVE LCLVECKMLK FSPSLLAAAA IYTAQCSLYQ FKQWTKTTEW YTDYSEEKLL ECSRLMVTFH QKAGSGKLTG VYRKYNTWKY
401: GCAAKIEPAL FLLDN

Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)

001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI

Arabidopsis Description

CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.