Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra005931.1-P
Bra006195.1-P
Bra006242.1-P
Bra006369.1-P
Bra007982.1-P
Bra007983.1-P
Bra008835.1-P
Bra009273.1-P
Bra010457.1-P
Bra012553.1-P
Bra013385.1-P
Bra013899.1-P
Bra016143.1-P
Bra017408.1-P
Bra019155.1-P
Bra020966.1-P
Bra023404.1-P
Bra025746.1-P
Bra027946.1-P
Bra032191.1-P
Bra032422.1-P
Bra034916.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G20590.1 Bra012553.1-P AT4G19210.1 20706207
AT1G20590.1 Bra013385.1-P AT4G19210.1 20706207
AT1G20590.1 Bra020966.1-P AT4G19210.1 20706207
AT1G20590.1 Bra010457.1-P AT4G25550.1 20706207
AT1G20590.1 Bra013899.1-P AT4G25550.1 20706207
AT1G20590.1 Bra019155.1-P AT4G25550.1 20706207
AT1G20610.1 Bra025746.1-P AT1G19520.1 20706207
AT1G20610.1 Bra032191.1-P AT1G43700.1 20706207
AT1G20610.1 Bra034916.1-P AT1G43700.1 20706207
AT1G20610.1 Bra027946.1-P AT1G56290.1 20706207
AT1G20610.1 Bra007982.1-P AT1G71380.1 20706207
AT1G20610.1 Bra007983.1-P AT1G71380.1 20706207
AT1G20610.1 Bra016143.1-P AT1G71380.1 20706207
AT1G20610.1 Bra006369.1-P AT3G11270.1 20706207
AT1G20610.1 Bra017408.1-P AT3G11270.1 20706207
AT1G20610.1 Bra032422.1-P AT3G11270.1 20706207
AT1G20610.1 Bra005931.1-P AT5G07300.1 20706207
AT1G20610.1 Bra009273.1-P AT5G07300.1 20706207
AT1G20610.1 Bra006195.1-P AT5G13330.1 20706207
AT1G20610.1 Bra008835.1-P AT5G13330.1 20706207
AT1G20610.1 Bra023404.1-P AT5G13330.1 20706207
AT1G20610.1 Bra006242.1-P AT5G14170.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX96631 Canola nucleus 98.05 98.05
Bra025831.1-P Field mustard nucleus 81.95 81.95
AT1G20610.1 Thale cress nucleus 84.63 80.89
Bra003727.1-P Field mustard nucleus 68.05 72.85
Bra015762.1-P Field mustard nucleus 74.88 71.23
PGSC0003DMT400075380 Potato nucleus 40.0 69.2
AT1G20590.1 Thale cress cytosol, golgi, nucleus, plastid 42.68 66.04
Solyc04g082430.2.1 Tomato nucleus 59.27 61.83
VIT_18s0001g14170.t01 Wine grape nucleus 66.34 61.68
PGSC0003DMT400025854 Potato nucleus 64.39 59.86
GSMUA_Achr5P19270_001 Banana cytosol 31.22 58.99
KRH60628 Soybean nucleus 56.1 56.79
Os06t0726800-01 Rice nucleus 57.8 56.56
Solyc12g094600.1.1 Tomato nucleus 58.54 56.47
Zm00001d036360_P002 Maize nucleus 58.05 56.13
KXG20945 Sorghum nucleus 57.8 55.9
KRH51329 Soybean nucleus, plastid 56.34 55.66
GSMUA_Achr11P... Banana nucleus 54.88 55.15
HORVU7Hr1G121820.6 Barley nucleus 55.37 54.05
GSMUA_Achr5P19110_001 Banana nucleus 55.85 54.01
TraesCS7D01G536000.1 Wheat nucleus 55.12 53.94
TraesCS7B01G472800.1 Wheat nucleus 55.12 53.94
GSMUA_Achr8P13320_001 Banana nucleus 55.12 53.81
TraesCS7A01G549500.1 Wheat nucleus 54.88 53.7
Bra017726.1-P Field mustard nucleus 52.2 52.71
Bra037265.1-P Field mustard nucleus 52.44 52.57
Bra024504.1-P Field mustard nucleus 53.66 52.51
Os04t0563700-01 Rice mitochondrion 52.44 51.19
TraesCS2A01G404800.1 Wheat nucleus 49.76 50.37
TraesCS2B01G422800.1 Wheat nucleus 50.0 50.12
Zm00001d026129_P001 Maize nucleus 51.71 49.77
EES12664 Sorghum nucleus 51.95 49.31
HORVU0Hr1G022770.1 Barley nucleus, plastid 32.93 48.56
TraesCS2D01G401700.1 Wheat nucleus, plastid 49.76 48.46
Zm00001d002662_P010 Maize nucleus 51.95 46.81
HORVU2Hr1G096070.2 Barley nucleus 49.76 43.31
Bra002046.1-P Field mustard nucleus 34.39 35.88
Bra028741.1-P Field mustard nucleus 35.85 35.42
Bra005880.1-P Field mustard nucleus, plastid 35.12 34.78
GSMUA_Achr11P... Banana endoplasmic reticulum, vacuole 55.85 34.28
Bra040793.1-P Field mustard nucleus 27.56 31.13
Bra040753.1-P Field mustard nucleus, plastid 27.56 31.13
Bra032220.1-P Field mustard nucleus 26.83 30.81
Bra011769.1-P Field mustard nucleus 31.95 30.61
Bra000822.1-P Field mustard nucleus 28.05 30.5
Bra031463.1-P Field mustard nucleus 27.07 30.08
Bra015671.1-P Field mustard plastid 27.8 29.53
Bra033658.1-P Field mustard nucleus 25.61 29.49
Bra032202.1-P Field mustard plastid 30.24 29.38
Bra023606.1-P Field mustard plastid 29.76 29.12
Bra026756.1-P Field mustard plastid 28.54 28.61
Bra026065.1-P Field mustard nucleus 34.63 28.06
Bra040792.1-P Field mustard nucleus, plastid 24.88 28.02
Bra040710.1-P Field mustard nucleus 25.12 27.76
Bra008973.1-P Field mustard nucleus, plastid 29.02 27.23
Bra003563.1-P Field mustard plastid 28.29 26.85
Bra022173.1-P Field mustard nucleus, plastid 24.63 26.79
Bra016654.1-P Field mustard nucleus, plastid 29.02 26.74
Bra008477.1-P Field mustard plastid 29.02 26.04
Bra026120.1-P Field mustard nucleus 28.29 24.89
Bra035186.1-P Field mustard plastid 27.8 24.68
Bra016640.1-P Field mustard nucleus 35.37 22.14
Bra036544.1-P Field mustard nucleus 27.56 11.45
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.2EnsemblPlantsGene:Bra016460EnsemblPlants:Bra016460.1EnsemblPlants:Bra016460.1-PInterPro:Cyclin-like
InterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634UniProt:M4DIY3PFAM:PF00134PFAM:PF02984PIRSF:PIRSF001771ScanProsite:PS00292
PANTHER:PTHR10177PANTHER:PTHR10177:SF350SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI0002546B62
SEG:seg:::::
Description
AT1G20610 (E=3e-142) CYCB2;3 | CYCB2;3 (Cyclin B2;3); cyclin-dependent protein kinase regulator
Coordinates
chrA08:+:18584774..18586717
Molecular Weight (calculated)
46662.9 Da
IEP (calculated)
4.834
GRAVY (calculated)
-0.379
Length
410 amino acids
Sequence
(BLAST)
001: MGRSDENSVG LIGSTNLQGG GGKIMPAAKT GPTRRALSAI NKNINEPPSY PYAVNNKRSL SERNAICNKP PPHRPVTRKF AAQLAGDKSQ IKEEETKKPD
101: SVPSEEAEDF NEPMFVQHTQ AMMEEIEMED ADEDKEEEEG VINIDACDEM NPLAVVEYIN DIYDFFKKSE ELSCVPPNYM DNQQDLNERM RGILIDWLIE
201: VHYKFELMEE TLYLTVSVID RFLAVHQIVR KKLQLVGVTA LLLACKYEEV SVPVVDDLIL ISDKAYTRRE VLDMEKLMAN TLQFNFSLPT AYVFMRRFLK
301: AAQSDKKLEV LSFFIIELCL VEYEMLEYTP SKLAASAIYT ARCTLNGFEE WSKTCEFHTG YKEEELLECA RKMVGFHQKA GTGKLTGVHR KYNTSKFSYA
401: ARTEPAGFLL
Best Arabidopsis Sequence Match ( AT1G20610.1 )
(BLAST)
001: MVRSDENSLG LIGSMSLQGG GVVGKIKTTA TTGPTRRALS TINKNITEAP SYPYAVNKRS VSERDGICNK PPVHRPVTRK FAAQLADHKP HIRDEETKKP
101: DSVSSEEPET IIIDVDESDK EGGDSNEPMF VQHTEAMLEE IEQMEKEIEM EDADKEEEPV IDIDACDKNN PLAAVEYIHD MHTFYKNFEK LSCVPPNYMD
201: NQQDLNERMR GILIDWLIEV HYKFELMEET LYLTINVIDR FLAVHQIVRK KLQLVGVTAL LLACKYEEVS VPVVDDLILI SDKAYSRREV LDMEKLMANT
301: LQFNFSLPTP YVFMKRFLKA AQSDKKLEIL SFFMIELCLV EYEMLEYLPS KLAASAIYTA QCTLKGFEEW SKTCEFHTGY NEKQLLACAR KMVAFHHKAG
401: TGKLTGVHRK YNTSKFCHAA RTEPAGFLI
Arabidopsis Description
CYCB2-3Cyclin-B2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.