Factsheet for Bra012553.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98609	Canola	cytosol	99.34	99.34
Bra020966.1-P	Field mustard	cytosol	98.68	98.68
AT4G19210.1	Thale cress	cytosol	97.02	97.02
Bra013385.1-P	Field mustard	cytosol	93.06	96.9
PGSC0003DMT400051207	Potato	cytosol	93.22	93.22
GSMUA_Achr7P14490_001	Banana	cytosol	92.4	92.4
GSMUA_Achr10P...	Banana	cytosol	92.4	92.4
GSMUA_Achr7P14480_001	Banana	cytosol	92.07	92.07
KRH28995	Soybean	endoplasmic reticulum	91.57	91.42
EER95217	Sorghum	cytosol	91.07	91.23
Solyc07g008340.2.1	Tomato	cytosol, nucleus, plastid	86.94	91.0
Os11t0546000-01	Rice	plasma membrane	90.58	90.73
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	93.39	90.4
Solyc08g075360.1.1	Tomato	cytosol, plastid	89.75	89.6
TraesCS4A01G143000.4	Wheat	cytosol, golgi	89.09	89.24
TraesCS4B01G160000.1	Wheat	cytosol, golgi	88.93	89.07
HORVU4Hr1G038380.19	Barley	cytosol	88.76	88.76
TraesCS2B01G600300.1	Wheat	cytosol	86.45	86.59
TraesCS4D01G159400.1	Wheat	cytosol	83.64	86.5
TraesCS2D01G594500.1	Wheat	cytosol	86.28	86.42
TraesCSU01G036500.1	Wheat	cytosol	85.95	86.09
HORVU2Hr1G123150.4	Barley	cytosol	86.28	85.43
Zm00001d029044_P006	Maize	cytosol	91.24	85.05
Zm00001d047534_P007	Maize	cytosol	91.07	84.9
TraesCS1D01G220000.1	Wheat	cytosol	80.5	81.3
TraesCS1B01G231900.1	Wheat	cytosol	80.0	80.8
Bra021494.1-P	Field mustard	cytosol	80.5	80.76
TraesCS1A01G218400.1	Wheat	cytosol	80.0	80.4
HORVU0Hr1G005840.5	Barley	cytosol, peroxisome	46.78	80.17
Bra001515.1-P	Field mustard	cytosol	76.36	76.62
HORVU1Hr1G055810.1	Barley	mitochondrion	79.5	75.63
Os02t0282900-01	Rice	plastid	71.74	71.38
TraesCS7B01G045400.1	Wheat	cytosol	50.08	68.4
KXG30050	Sorghum	cytosol	68.26	68.15
Bra017243.1-P	Field mustard	cytosol	31.41	25.1

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	EnsemblPlantsGene:Bra012553	EnsemblPlants:Bra012553.1	EnsemblPlants:Bra012553.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439
InterPro:IPR017896	UniProt:M4D7U3	InterPro:P-loop_NTPase	PFAM:PF00005	PFAM:PF00037	PFAM:PF04068
PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211	PFscan:PS50893	PFscan:PS51379	PANTHER:PTHR19248
PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1	InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF54862	UniParc:UPI00025403E0	:	:	:	:

Description

AT4G19210 (E=0.0) ATRLI2, RLI2 | ATRLI2; transporter

Coordinates

chrA03:+:23587142..23589915

Molecular Weight (calculated)

68449.8 Da

IEP (calculated)

7.575

GRAVY (calculated)

-0.244

Length

605 amino acids

Sequence
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGVN TFKLHRLPVP
101: RPGQVLGLVG TNGIGQSTAL KILAGKLKPN LGRFTNPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPKAV RGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFREESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLKVTECE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DETEESDIEI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFVSD VMKPLQIEQL MDQEVVNLSG GELQRVALAL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKAI KRFILHAKKT AFIVEHDFIM ATYLADRVIV YEGQPSIDCV ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.