Factsheet for Solyc07g008340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051207	Potato	cytosol	96.89	92.56
Solyc08g075360.1.1	Tomato	cytosol, plastid	92.21	87.95
GSMUA_Achr7P14480_001	Banana	cytosol	91.87	87.77
CDX78930	Canola	cytosol	91.7	87.6
CDX99388	Canola	cytosol	91.7	87.6
CDY01588	Canola	cytosol	91.7	87.6
CDY05197	Canola	cytosol	91.7	87.6
GSMUA_Achr7P14490_001	Banana	cytosol	91.7	87.6
CDX76485	Canola	cytosol	91.52	87.44
CDX98609	Canola	cytosol	91.52	87.44
GSMUA_Achr10P...	Banana	cytosol	91.52	87.44
Bra013385.1-P	Field mustard	cytosol	87.89	87.44
TraesCS4D01G159400.1	Wheat	cytosol	88.41	87.35
Bra020966.1-P	Field mustard	cytosol	91.35	87.27
AT4G19210.1	Thale cress	cytosol	91.0	86.94
Bra012553.1-P	Field mustard	cytosol	91.0	86.94
CDY09282	Canola	cytosol	89.27	86.72
KRH28995	Soybean	endoplasmic reticulum	90.66	86.47
EER95217	Sorghum	cytosol	90.31	86.42
Os11t0546000-01	Rice	plasma membrane	89.97	86.09
VIT_02s0087g00770.t01	Wine grape	cytosol, mitochondrion	92.56	85.6
TraesCS4B01G160000.1	Wheat	cytosol, golgi	88.24	84.44
TraesCS4A01G143000.4	Wheat	cytosol, golgi	88.24	84.44
HORVU4Hr1G038380.19	Barley	cytosol	88.06	84.13
HORVU0Hr1G005840.5	Barley	cytosol, peroxisome	50.17	82.15
TraesCS2D01G594500.1	Wheat	cytosol	85.81	82.12
TraesCSU01G036500.1	Wheat	cytosol	85.12	81.46
TraesCS2B01G600300.1	Wheat	cytosol	85.12	81.46
HORVU2Hr1G123150.4	Barley	cytosol	85.47	80.85
Zm00001d029044_P006	Maize	cytosol	90.66	80.74
Zm00001d047534_P007	Maize	cytosol	90.31	80.43
TraesCS1D01G220000.1	Wheat	cytosol	81.49	78.63
TraesCS1B01G231900.1	Wheat	cytosol	80.8	77.96
TraesCS1A01G218400.1	Wheat	cytosol	80.97	77.74
HORVU1Hr1G055810.1	Barley	mitochondrion	81.14	73.74
Os02t0282900-01	Rice	plastid	71.45	67.93
KXG30050	Sorghum	cytosol	68.34	65.18
TraesCS7B01G045400.1	Wheat	cytosol	47.4	61.85

Protein Annotations

MapMan:17.6.1	Gene3D:3.40.50.300	InterPro:4Fe4S_Fe-S-bd	InterPro:4Fe4S_Fe_S_CS	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
InterPro:ABC_transporter_CS	GO:GO:0000054	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006415	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016887
GO:GO:0019538	GO:GO:0043024	InterPro:IPR003439	InterPro:IPR017896	UniProt:K4CBV3	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00037	PFAM:PF04068	PRINTS:PR01868	ScanProsite:PS00198	ScanProsite:PS00211
PFscan:PS50893	PFscan:PS51379	PANTHER:PTHR19248	PANTHER:PTHR19248:SF21	InterPro:RLI1	InterPro:RLI_dom_1
InterPro:RNaseL-inhib_metal-bd_dom	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF54862	EnsemblPlantsGene:Solyc07g008340.2	EnsemblPlants:Solyc07g008340.2.1
UniParc:UPI000276B3FF	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:3121463..3128185

Molecular Weight (calculated)

64701.5 Da

IEP (calculated)

7.595

GRAVY (calculated)

-0.159

Length

578 amino acids

Sequence
(BLAST)

001: MSDRLTRIAI VSDDKCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKIAFI SEELCIGCGI CVKKCPFEAI QIINLPKDLD KDTTHRYGPN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KVLAGKLKPN LGRFTNPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPKAV QGNVGQVLDQ KDERDVKEKL
201: CVDLELNQVL DRNVGDLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQEA AEEIESYARY RYPTMTKTQG NFKLKVSEGE FTDSQIVVML GENGTGKTTF IRMLAGLLKP
401: DVVEGSDIEM PEFNVSYKPQ KISPKFQSTV RHLLHQKIRD SYQHPQFCSD VMKPLQIEQL MDQEVVNLSG GELQRVALAL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGTPSIDCV ANAPQSLLTG MNLFLSVTSE HYVSKGPN

Best Arabidopsis Sequence Match ( AT4G19210.1 )
(BLAST)

001: MADRLTRIAI VSSDRCKPKK CRQECKKSCP VVKTGKLCIE VTVGSKLAFI SEELCIGCGI CVKKCPFEAI QIINLPRDLE KDTTHRYGAN TFKLHRLPVP
101: RPGQVLGLVG TNGIGKSTAL KILAGKLKPN LGRFTSPPDW QEILTHFRGS ELQNYFTRIL EDNLKAIIKP QYVDHIPRAV KGNVGEVLDQ KDERDKKAEL
201: CADLELNQVI DRDVENLSGG ELQRFAIAVV AIQNAEIYMF DEPSSYLDVK QRLKAAQVVR SLLRPNSYVI VVEHDLSVLD YLSDFICCLY GKPGAYGVVT
301: LPFSVREGIN IFLAGFVPTE NLRFRDESLT FKVAETPQES AEEIQSYARY KYPTMTKTQG NFRLRVSEGE FTDSQIIVML GENGTGKTTF IRMLAGLLKP
401: DDTEGPDREI PEFNVSYKPQ KISPKFQNSV RHLLHQKIRD SYMHPQFMSD VMKPLQIEQL MDQEVVNLSG GELQRVALTL CLGKPADIYL IDEPSAYLDS
501: EQRIVASKVI KRFILHAKKT AFVVEHDFIM ATYLADRVIV YEGQPSIDCT ANCPQSLLSG MNLFLSHLNI TFRRDPTNFR PRINKLESTK DREQKSAGSY
601: YYLDD

Arabidopsis Description

ABCE2ABC transporter E family member 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.